XLOC_025132 (si:dkey-117i10.1)


Basic Information

Item Value
gene id XLOC_025132
gene name si:dkey-117i10.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13440900 ~ 13446085 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049662
AACATCTGAGCTCAACACCACAAACCAAATGTGCTCTTGAGCCGGTGATGGACGTTTACTGCAGTAATAATGTTCTTCAGGCAAGGAGAGCCGTGGAGCAGCTGAGGATGGAGACTGAACTGCAGAGAATCAAGATTTCAGCAGCGGCGGAGCAGCTCGTCCAGTACTGTCAGGAGCACCGCAGAGCTGACCCTCTGCTCACCGGCATCGCTGCGTCCTCAAACCCCTTCAAAGACAAGAAGACCTGCGTCCtgctgtgaaacacacacacaccgtcatcACAGTAGTCATTAATAATCTCTTTTATTTGCAGTGTTGATAACGACACCTCGTCAAACTGTGCGTCCATAAAGATTTCTTGAAAAAAACACAACCACATTCAATCAGTCAGAGCACGATTACTGTCTGACGAGGACTATAAATAAGAGCTCATACGTACTGTGGAGATTTGAAATGAGGAGTTTCATACAGAGTGCATATATTGGAAAGCTTGCTGCCACATTTGTGAACTGtgttattttttaagaaatgaaACTGGATCC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031680 G-protein beta/gamma-subunit complex cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031681 G-protein beta-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-371 Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex.

Ensembl:

ensembl_id ENSDARG00000062537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049662 True 542 mRNA 0.45 3 13440900 13446085

Neighbor

gene id symbol gene type direction distance location
XLOC_025131 dre-mir-27c coding upstream 27687 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 coding upstream 34577 13406226 ~ 13406323 (+)
XLOC_025129 NA coding upstream 34818 13389862 ~ 13406082 (+)
XLOC_025128 NA coding upstream 73392 13360703 ~ 13367508 (+)
XLOC_025127 CU138547.1 coding upstream 93804 13332870 ~ 13347096 (+)
XLOC_025133 zgc:77748 coding downstream 23619 13469704 ~ 13473197 (+)
XLOC_025134 NA coding downstream 30787 13476872 ~ 13477873 (+)
XLOC_025135 CABZ01079251.1 coding downstream 36457 13482542 ~ 13489945 (+)
XLOC_025136 JMJD8 coding downstream 65899 13511984 ~ 13521115 (+)
XLOC_025137 si:ch73-106n3.1 coding downstream 113114 13559199 ~ 13567762 (+)
XLOC_025429 BX649540.1 misc downstream 16802654 30248739 ~ 30249036 (+)
XLOC_025125 LO018183.1 non-coding upstream 273572 13149550 ~ 13167328 (+)
XLOC_025145 NA non-coding downstream 582158 14028243 ~ 14073770 (+)
XLOC_025147 NA non-coding downstream 754958 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 non-coding downstream 796034 14242119 ~ 14248538 (+)
XLOC_025149 NA non-coding downstream 805159 14251244 ~ 14254765 (+)

Expression


Co-expression Network