XLOC_025134



Basic Information


Item Value
gene id XLOC_025134
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13476872 ~ 13477873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00052620
AACTGAGATTGacaaaaagacttttgtcagAATTGGAGCCTGAAGCTAAGAGAGACTGACTTAATGAACTTGATCTCAACCTTCTAGTCCTTCAAAAATGTCATGATGTAATGGGGAGTCTGAGACTGTGTTAGAATCCATATGCAGAAGTTTACTTATGGGATTAGACATAGACATCAACGGGTAAACAAGCGGAGATTCTGCAACATGCAAGCAGTTCAAACCAAACAACAAACACAGATGCAATTCCAGGAGATGTAGTGGTAATTCAAGCAGAGGATCAGTGTACCAATAATCAGTCCAAAACAGATCAAGAAACACAGAGGCAAATCCAGAATACATGGTGAGAAGGCAGGCAAAAGTTCAAGGCAACAGTAAGCAGTCCAAAACAGAGCAAGAGGGCAAAGACAGATAGCGAATCATGAAAGTCACTTGAAATAACGCTTGGTAATGCAGGTAAACTAGGAATACTTTGCAAGGAAGCCTGGCCTGAGCTCTTGCTGAAATACAGCACAAACAGAAAGTGACTGCAGAGGGAGCGGAGCTGAGCCTGTAGTCGGGCGAGGGCTTCCTCTGCTGGCGTAGCATTACATATGATAAGCTAGTGTTTCAGGAATGAAATAATCAGTACAATCTACaagaacagtgtttctcaactggtgggtcgtgacccaaaagtggtcgcgggaacattttcagtgggtcgcggagtgtgtagtcaaaaaaacaacaaaaattaaatattttacttattttgcttatatcccacttttattttgaaatgcgtctGCGACAACTGaacttttccttaccctaaccactgtttgcagtatttgatgtttttactctgtaataatttgatgcattttgttaaatgacag

Function


GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0017144 drug metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0008241 peptidyl-dipeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00052620 True 881 lncRNA 0.41 2 13476872 13477873

Neighbor


gene id symbol gene type direction distance location
XLOC_025133 zgc:77748 coding upstream 3675 13469704 ~ 13473197 (+)
XLOC_025132 si:dkey-117i10.1 coding upstream 30787 13440900 ~ 13446085 (+)
XLOC_025131 dre-mir-27c coding upstream 63659 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 coding upstream 70549 13406226 ~ 13406323 (+)
XLOC_025129 NA coding upstream 70790 13389862 ~ 13406082 (+)
XLOC_025135 CABZ01079251.1 coding downstream 4669 13482542 ~ 13489945 (+)
XLOC_025136 JMJD8 coding downstream 34111 13511984 ~ 13521115 (+)
XLOC_025137 si:ch73-106n3.1 coding downstream 81326 13559199 ~ 13567762 (+)
XLOC_025138 si:ch73-106n3.2 coding downstream 91933 13569806 ~ 13576052 (+)
XLOC_025139 hspbp1 coding downstream 122841 13600714 ~ 13618382 (+)
XLOC_025429 BX649540.1 misc downstream 16770866 30248739 ~ 30249036 (+)
XLOC_025128 NA non-coding upstream 109364 13360703 ~ 13367508 (+)
XLOC_025125 LO018183.1 non-coding upstream 309544 13149550 ~ 13167328 (+)
XLOC_025145 NA non-coding downstream 550370 14028243 ~ 14073770 (+)
XLOC_025147 NA non-coding downstream 723170 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 non-coding downstream 764246 14242119 ~ 14248538 (+)
XLOC_025149 NA non-coding downstream 773371 14251244 ~ 14254765 (+)
XLOC_025151 NA non-coding downstream 799777 14277650 ~ 14287841 (+)

Expression



Co-expression Network