G574254 (LOC106609167)


Basic Information

Item Value
gene id G574254
gene name LOC106609167
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11205831 ~ 11206048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU654775
tggcagaccacgtgtaacaacacctgcacaggatcggtatatcTGAACATCAcaactgcgggacaggtacaggatgtcaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccacgataggctgagagaggctggactgagggcttgtaggcttgttgtaaggcaggtcctcaccagacatcaccggcaac

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU654775 True 218 lncRNA 0.54 1 11205831 11206048

Neighbor

gene id symbol gene type direction distance location
LOC110527184 LOC106575653 coding upstream 300122 10900155 ~ 10905709 (+)
LOC110527185 LOC106574771 coding upstream 311163 10805952 ~ 10894671 (+)
LOC110527193 LOC106574775 coding upstream 673955 10496557 ~ 10531876 (+)
LOC110527195 LOC106574795 coding upstream 743255 10427973 ~ 10462576 (+)
LOC110528725 LOC106574750 coding upstream 782263 10421184 ~ 10423568 (+)
LOC118965246 LOC106574739 coding downstream 290505 11496553 ~ 11498867 (+)
LOC110528830 LOC106575616 coding downstream 330858 11536906 ~ 11628121 (+)
LOC110495474 LOC106573985 coding downstream 537906 11743954 ~ 11750311 (+)
LOC110495473 LOC106575640 coding downstream 550683 11756731 ~ 11764384 (+)
LOC118965247 LOC106575639 coding downstream 568414 11774462 ~ 11776663 (+)
G574251 NA non-coding upstream 5674 11199950 ~ 11200157 (+)
G574192 NA non-coding upstream 105058 11100565 ~ 11100773 (+)
G574190 NA non-coding upstream 107185 11098234 ~ 11098646 (+)
G574189 NA non-coding upstream 107657 11097899 ~ 11098174 (+)
G574186 NA non-coding upstream 110489 11095115 ~ 11095342 (+)
G574263 NA non-coding downstream 13452 11219500 ~ 11219735 (+)
G574269 NA non-coding downstream 23383 11229431 ~ 11229664 (+)
G574270 NA non-coding downstream 23731 11229779 ~ 11295760 (+)
G574317 NA non-coding downstream 101082 11307130 ~ 11307674 (+)
G574319 NA non-coding downstream 104389 11310437 ~ 11310696 (+)
G574244 NA other upstream 8584 11178796 ~ 11197247 (+)
G574194 NA other upstream 103545 11101545 ~ 11102286 (+)
G574122 NA other upstream 129830 11003504 ~ 11076001 (+)
G574038 NA other upstream 328647 10876107 ~ 10877184 (+)
LOC110527289 LOC106590510 other upstream 1025996 10173615 ~ 10233047 (+)
G574284 NA other downstream 44051 11250099 ~ 11250780 (+)
G574348 NA other downstream 143301 11349349 ~ 11349853 (+)
G574754 NA other downstream 279205 11485253 ~ 11488504 (+)

Expression


Co-expression Network