XLOC_025140 (pglyrp6)


Basic Information

Item Value
gene id XLOC_025140
gene name pglyrp6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13624815 ~ 13633331 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049670
AGCGCACGTTGAAAGCATCTGTCCACTTCTCAAAGCTCGAGCCACATGCATGATGGGAAGGCAGTTTATCAGTGTGTGCTTACGTAAGGGTCAGGATGGATTTAAAAGGCGTGCGAGCTCTGAGGCAAACACACAATCAGACTTCATCATCAGAGGATATTTAGCGCTCAACTACTCTGTCTTCATGATGGATCTACGGCTGTTTTCCCTGCTCATGCTGTTCGCCTGTGGCATTGCTGAAGCCACTACCCTGAAGCGCATGGATGACTTCATTAGCGCTGTGGAGAGCATTGAAGCTGTGAATCCGGCTCTCTCAATGCTGGACGTACTAAAAGGTCTTCGTAAAGCCTCCGGTTTGGAAACCGACCTGAGCCAGCAGCTCCTTGGTGATGCACATCCAGAGCTCACGATGGATCCATCAGTGGCTTCAAACATCCATGAACTCATCAATCACCATGTGTCGGATATCACGGAAGAAGGTGTGGTGCTGACTTTGGATGGCTCAAATGTGGCGTTGGCTCCTCTGCTCCTGGGACTCGAGGCCGGCCTTCAATCTATCGATCTCTATCCTTTAACATTGACCGAAAACCTGCTCAACTCTTTTGTCCATCATGTCCAGAATCAGGAGTCCAGCGCTCTTCTGGGCACCAAAGGATATTGGGACAGCATTAAATCTCCAAGAGTCTACACTCTCTCTGGTTTGCCTTCATTGGCGACGGATGCCCTGATAATCGGAGGGATGGATGGGTTTATTCTGGGGTCTGAAATGGCCTCGTCTGACCATCCTGAGGAGTCTCTGAGTAGCCTGTTGAGGAGTTATTACAGTCAGAAGCTGGACGATGCCGCTCCACGTCTCATAAGTCAGAAGCGAAGGATGAACTTCAGAAACATGGCTGACTTCTCTCTGATGAAAACACAAGTGGTTCGAGCTCTGACGGTTCGCAGAAACTTAAACCAGGATGAGAGGAAGAAGCTGGATGATGTTGTGAATGAGGGCTTTGAGGAGTTTGTTCATGTGTATGCagTGTGTCCCAACATCATCACAAGGTCTCAGTGGGGCGCAGCTTCATACATCGGCTCCCCATCGTATCTGTCTCTGCCTGTGCGGTATCTCTTCATCCACCACACGTATCAGCCCTCCAAACCTTGCACCACTTTTGAGCAGTGTGCGGCCGAGATGCGCTCCATGCAGCGCTACCACCAGCAGAGCAACGGCTGGTCCGACATCGGCTACAGTTTTGTGGCGGGTTCTGATGGAAACCTGTATGAAGGCCGCGGATGGAACTGGGTCGGCGCTCACACCTACGGCTACAACTCTATTGGCTACGGCGTCTGCTTCATCGGCGACTACACCTCCACTCTCCCTGCCAGCAGTGCGATGAATATGGTGCGCTACGACTTCACTTACTGCGCCACAAACGGAGGACGATTGTCCAAATCATACTCTCTGTACGGACACAGACAGGCCGCGGCCACCGAGTGTCCTGGAAACACCCTGTACCGCCAGATCCAGACATGGGAGCGATACCAGAGTTATCTGCCTTGAGGACTGAAGTCGTCAGCTAATGTTGTTTCCTGAACAGTTGTTCATAATAAATGCATGCTTAAAAA

Function

symbol description
pglyrp6 Enables N-acetylmuramoyl-L-alanine amidase activity. Acts upstream of or within defense response to bacterium. Is expressed in several structures, including acinar cell; gill lamella; gut absorptive cell; liver; and pleuroperitoneal region. Orthologous to human PGLYRP2 (peptidoglycan recognition protein 2).

GO:

id name namespace
GO:0009253 peptidoglycan catabolic process biological_process
GO:0042742 defense response to bacterium biological_process
GO:0050830 defense response to Gram-positive bacterium biological_process
GO:0016045 detection of bacterium biological_process
GO:0008745 N-acetylmuramoyl-L-alanine amidase activity molecular_function
GO:0042834 peptidoglycan binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016019 peptidoglycan immune receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071227-2 Enables N-acetylmuramoyl-L-alanine amidase activity. Acts upstream of or within defense response to bacterium. Is expressed in several structures, including acinar cell; gill lamella; gut absorptive cell; liver; and pleuroperitoneal region. Orthologous to human PGLYRP2 (peptidoglycan recognition protein 2).

Ensembl:

ensembl_id ENSDARG00000103642

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049670 True 1611 mRNA 0.51 5 13624815 13633331

Neighbor

gene id symbol gene type direction distance location
XLOC_025139 hspbp1 coding upstream 6433 13600714 ~ 13618382 (+)
XLOC_025138 si:ch73-106n3.2 coding upstream 48763 13569806 ~ 13576052 (+)
XLOC_025137 si:ch73-106n3.1 coding upstream 57053 13559199 ~ 13567762 (+)
XLOC_025136 JMJD8 coding upstream 103700 13511984 ~ 13521115 (+)
XLOC_025135 CABZ01079251.1 coding upstream 134870 13482542 ~ 13489945 (+)
XLOC_025141 si:ch211-194b1.1 coding downstream 4052 13637383 ~ 13684397 (+)
XLOC_025142 ptger1b coding downstream 197268 13830599 ~ 13837063 (+)
XLOC_025143 ilf3b coding downstream 209223 13842554 ~ 13901074 (+)
XLOC_025144 syce2 coding downstream 296529 13929860 ~ 13935837 (+)
XLOC_025145 NA coding downstream 394912 14028243 ~ 14073770 (+)
XLOC_025429 BX649540.1 misc downstream 16615408 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 146942 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 211602 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 218492 13406226 ~ 13406323 (+)
XLOC_025129 NA non-coding upstream 218733 13389862 ~ 13406082 (+)
XLOC_025128 NA non-coding upstream 257307 13360703 ~ 13367508 (+)
XLOC_025147 NA non-coding downstream 567712 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 non-coding downstream 608788 14242119 ~ 14248538 (+)
XLOC_025149 NA non-coding downstream 617913 14251244 ~ 14254765 (+)
XLOC_025151 NA non-coding downstream 644319 14277650 ~ 14287841 (+)

Expression


Co-expression Network