XLOC_025142 (ptger1b)


Basic Information

Item Value
gene id XLOC_025142
gene name ptger1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13830599 ~ 13837063 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049672
ATCAGCCGGTCCTGTAACCTGGTGGAGATGTTATCCATCCAGCAATACAACAGCACGGTTTTAGCTGAGGATGAAGCGTTGGTCAATCAGAGCCATCATTATGTGGCACCGCTGCGCTGCAGGGAAAACCTGACCACCACCAGCCCGACGGCAGCGGGTCTGTCCATGACCCTGGGCATAGTCTCCAACATCATAGCGCTGGCCATCCTGGCTAATGCCTACAGCCGGCGCAGCAAAACCACCAAAGCCACATTTCTGCTGTTTGCCAGTTCTCTGGTGGTCACAGACCTCGTCGGACATGTAATTCCAGGCGCTCTGGTTCTTCATCTCTACCTGTCTGGCACTGGACCTTGTCTTCCAGCAGTGCCCGATGGGACCTGTCAGTTCCTAGGCGGCAGCATGGTTTTTTTCGGGCTGTGCCCGCTGTTTCTGGGCTGTGCAATGGCAGTGGAGCGATGCATAGGTGTGACCAGGCCTCTCCTACACAAACGCTTGGTTTGCACCACCCAGACTAAGATTGTAATGGTGATGGTTTGGCTGCTGGCTTTAAGTGTGGCATTTCTGCCCTTCTTCCGCCTAGGCTCCTACACCTACCAGTACCCATGGACGTGgtgctttattaatgttttagACGAAACAAACGTGACTGATGTGATATTTGTGGTGCTCTTCTCCGGGCTGGGACTGGCCTCACTGGCCGTAGCTCTGGTCTGTAACACCATCAGCGGGGTGACTCTGGTGGCTGCAAGACTTAGAAAGAAGCAAAAGCAGGAGTCCATCCGTCAAAGCAAGAAGGACAAGCAGGAGTCTGTTCGTCTCAGCAGGAAGGACAAGCAAAACAAGTCCAGCAAAACACATGATATTGAGATGGTGGTACAGCTGGTGGGCATCATGGTCACATCTTGCATCTGCTGGAGCCCTCTGCTGATCTTCGGTCTGATGTCAGTCATCCGTTCGTCCATCAGCTCCATGGGTGATGATCTGGAAATGTCCTACCGGACTTTATTAGTAATGGGAGTGCGCCTGGCCTCCTGGAATCAAATCCTGGACCCCTGGGTGTATATTCTTCTGCGCCGAGCCATCCTAAGGAAGATCTACTACTTAACCACGGGCCGAACAGGACGCAAAGGGAGCACATTCCGGCGGTGGGAGGCCAGCTCCTTCCAGAACTCAGTGAAGAAAGCCATTAATCAGACCTGATGGAGTGTGGGATGCCGGAGTGTGAGTCCTACCACATGGAAAACAGTCAGACACTTAAAGTGAAAGCGTATGTGAGTTCCTTTTGCTTGAATGGTGGATGAAGGAGCAGCATACTGGAAGCTGAATTTGGAAGCGTGCTCTGGATTAACCGCAGAGAC

Function

symbol description
ptger1b Enables prostaglandin E receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Orthologous to human PTGER1 (prostaglandin E receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004957 prostaglandin E receptor activity molecular_function
GO:0004960 thromboxane receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-278 Enables prostaglandin E receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Orthologous to human PTGER1 (prostaglandin E receptor 1).

Ensembl:

ensembl_id ENSDARG00000104847

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049672 True 1358 mRNA 0.53 2 13830599 13837063

Neighbor

gene id symbol gene type direction distance location
XLOC_025141 si:ch211-194b1.1 coding upstream 146202 13637383 ~ 13684397 (+)
XLOC_025140 pglyrp6 coding upstream 197268 13624815 ~ 13633331 (+)
XLOC_025139 hspbp1 coding upstream 212217 13600714 ~ 13618382 (+)
XLOC_025138 si:ch73-106n3.2 coding upstream 254547 13569806 ~ 13576052 (+)
XLOC_025137 si:ch73-106n3.1 coding upstream 262837 13559199 ~ 13567762 (+)
XLOC_025143 ilf3b coding downstream 5491 13842554 ~ 13901074 (+)
XLOC_025144 syce2 coding downstream 92797 13929860 ~ 13935837 (+)
XLOC_025145 NA coding downstream 191180 14028243 ~ 14073770 (+)
XLOC_025146 si:ch211-108d22.2 coding downstream 320027 14157090 ~ 14189022 (+)
XLOC_025147 NA coding downstream 363980 14201043 ~ 14202519 (+)
XLOC_025429 BX649540.1 misc downstream 16411676 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 352726 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 417386 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 424276 13406226 ~ 13406323 (+)
XLOC_025129 NA non-coding upstream 424517 13389862 ~ 13406082 (+)
XLOC_025128 NA non-coding upstream 463091 13360703 ~ 13367508 (+)
XLOC_025148 AL954138.2 non-coding downstream 405056 14242119 ~ 14248538 (+)
XLOC_025149 NA non-coding downstream 414181 14251244 ~ 14254765 (+)
XLOC_025151 NA non-coding downstream 440587 14277650 ~ 14287841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_02293534_02295639 NA coding CI01000113 null 2292344 ~ 2295688 (+)