XLOC_025145


Basic Information

Item Value
gene id XLOC_025145
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14028243 ~ 14073770 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052621
AACGATTGCAAAATCGGCGCATTTTCACAACCTTACAGAAAACTAGCAATGATTCTTATGGAGGGAGaggGCCAGTGCTGTTGCTGAAGATTAGGCCATGCGAGGAAAGCTTTCAATGGGCCAAACTCCAGTGCACAATGTTTCCGTTGTGCTGCGGCTCAAAACACATGCAGCCGTGGCTGTATCCGTTGACCCGACGCTCTCTGCATTTCTAAATAAGCCAGCACTGACCTACTTTTCAGCTGACCTGTTTATGCAAAAGCCTCCATGCGCTTCAGTCACATAAAGGGGGACAAAGGGGAAGCAAAGCCCAATTGGTGGGACTGTGCTACTGTCACCAGCACTGTTGTTTGGAGAACATTACCTGCTTCAATAGCATGTGTGTAAGAGCTTATGAAATGGGTTACGACACCAACTGACACTAGATGAATTGTACTCCATGTATTCATGCAGTTATGAGATGCTGGTTGCGTTGGCATTTTTCGTTCAGCACCGATTTCTATACAAAGAGACATTACGTGTGACCCTGAAGCACAAAAACAGGTTTATGTTGCAAGCGTACGGTATGTTCAAAAAGTACATGCCATTTTTTCAAATCAAatttgtagattttatttttatcatcaatAGATCATTTTAATACTGATTAAATGATCCAAAGACATTTAGTAAAATCACTTCTGTCTATATATTAACTTAATTGCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052621 True 706 lncRNA 0.41 3 14028243 14073770

Neighbor

gene id symbol gene type direction distance location
XLOC_025144 syce2 coding upstream 92406 13929860 ~ 13935837 (+)
XLOC_025143 ilf3b coding upstream 127169 13842554 ~ 13901074 (+)
XLOC_025142 ptger1b coding upstream 191180 13830599 ~ 13837063 (+)
XLOC_025141 si:ch211-194b1.1 coding upstream 343846 13637383 ~ 13684397 (+)
XLOC_025140 pglyrp6 coding upstream 394912 13624815 ~ 13633331 (+)
XLOC_025146 si:ch211-108d22.2 coding downstream 83320 14157090 ~ 14189022 (+)
XLOC_025147 NA coding downstream 127273 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 coding downstream 168349 14242119 ~ 14248538 (+)
XLOC_025149 NA coding downstream 177474 14251244 ~ 14254765 (+)
XLOC_025150 si:ch211-108d22.1 coding downstream 185345 14259115 ~ 14260797 (+)
XLOC_025429 BX649540.1 misc downstream 16174969 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 550370 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 615030 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 621920 13406226 ~ 13406323 (+)
XLOC_025129 NA non-coding upstream 622161 13389862 ~ 13406082 (+)
XLOC_025128 NA non-coding upstream 660735 13360703 ~ 13367508 (+)
XLOC_025151 NA non-coding downstream 203880 14277650 ~ 14287841 (+)
XLOC_025154 CU639471.1 non-coding downstream 325455 14399225 ~ 14399652 (+)

Expression


Co-expression Network