XLOC_025148 (AL954138.2)


Basic Information

Item Value
gene id XLOC_025148
gene name AL954138.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14242119 ~ 14248538 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049683
ttaCTCGAATAAAAAatcctctttgtttcctgataaggggaataactcgagtgtctcctcgagctcagagccctccccccggacagcacgccaaatatgctttatacttaaacgaatgcaagtgtgaactcgtgaagtgatgttttgtaaacaaatttcgggaggagcatgcgcagaagtttcagtatcgaatacgtcattgacaatcatcccattatcaaatcagttcttgaacaaacccctatatataccaaagctgtcttacctgcagcatctcacaaCTTTAGCACCTCTtcaccaccccgtcacctcacctcttgcattaAATCcccggggggagcgttctggggccagGCTAGATAGTTTGCTTGAATTCCAACTactctttgtttcctgataaggggaataactcgagttggggtgactcctcgagctcagagccctcccctggacagcatgccaaatatgctttatacttaaacgaatgcaagtgtgaactcgtgaaatgtCTTCTTGTACTTTGCCTTTTTTGCCAAAGGGACGTAATACCATCTGCCAGATGGAAGTAACAAAGGAACCATGTAAAGGTTTAACCATGCAATCAGCACCCTTGTTGAGTAGTCAGGGCACTGATGAGGGCTATAGCCATTTTAATGTCTGTCTTCTTTGCAAAATTCCAGTGCACTAAAAGTTTATTTGTGTGGATGTTAGTTTTATGCATGCTGAGTTGCCACAAATTgagcagtttattttattttttttgtcaggtTTTGGCACACAGGTGATAAAGAAAAAAGATTCCTGATGAATCTCATTTCTGCAGCAGTACACAATGacacagatacaggaacaagtTTCTTAAATCTGCTGTTATCTGTGTGCAGTTATAAAAACTTCCCTTTTAATGAAGAGTGCAATGATTGTAATCAGACTAATTTCCTGCTGGATCTTTGCTCATATGTGAAGAACTATGAGACTCAAACAGGGAGGAGTTTCCTTCCAGCATTACAGTCAGTTTTCCAGATTCCTGATGTCTGGATCATAGATCTCTCACAGAGAAAGTCCTCCATCCTTCTGGAAGTGCTGAAACTCCAAAGAGAGAAGAAACCAGTAGAGCTGAGAGGATTTTCAGAGGAAGAGAGTGAAGTGAGGAGTTTCCTCCAGTGTCTGCGCTTCATCTCACAGCTCATATTCTCTAATCAGAGTGAAAATGATCGAAGCAGATTTCTTGTGAGTCTCTTTATCAAAGCAGCAGAGTTTGAGACACAGTCTGGAGAGCAGATGCCGAAACTGTTATCCTCAGTCTGCATATACACATCATTTCCTTATGAAAAGACTGACATAACTAAACAGACTGATTTCCTGCTGGATCTTTACTCACATGTAAAGAACTATGAGACTCAAACTAGCAGGAGTCTCCTTCCAGCATTACAGTCAGTTTTCCAGTTCCCTGATGTCTGGATCATAGATCTCTCAAAGAGAAAGACCTCTGTCCTCATGGAAGTGCTGAATCTGCAAGCAAATAAGAAACCACTAGAGCTGAGAAGATGTTCAGAGAAAAAGAGTAAAGTGAGGAGATTGCTCCAGTGTCTGCCCTTCATCTCACAGCTCAGATTCTCTAAACCGAGTAAAAGTGTTCAAAGCAAATTTCTTCTGAGACTCTTCATTAATGCAGCAGAGACTGAGACACAGACAGGAGAGCAGATGTTGAAACTGTTATCCTCAGTCTGCACATACAGCTCTTTTCCTTATGAAAAAACTGACAGAATTAAACAGAGTGATTTCCTGCTGGATCTTTACTCACATGTGAAGAATTATGAGACTCAAACTAGCAGGAGTTTCCTCCCAGCATTACAGTCAGTTTTCCAGTCTCCTGATGTCTGGATCATAGATCTCTCAGACAAAAAGACCTCTGTCCTCCTGGAAGTGCTGAAACTCCAAACAAAGAAGAAACCAGTAGAGCTGAGAGGATTTTCAGAGGAAGAGAGTGAAGTGAGGAGTTTCCTCCAGTGTCTGCCCTTCATCTCACAGCTCAGGTAA
>TCONS_00052330
atcaaTTGTGTCATATCTttaagttttctaatatttgtatttattcattttctcatTTTCATGTTACAGATTCTCTAATCAGAGTGAAAATGATCGAAGCAGATTTCTTGTGAGTCTCTTTATCAAAGCAGCAGAGTTTGAGACACAGTCTGGAGAGCAGATGCCGAAACTGTTATCCTCAGTCTGCATATACACATCATTTCCTTATGAAAAGACTGACATAACTAAACAGACTGATTTCCTGCTGGATCTTTACTCACATGTAAAGAACTATGAGACTCAAACTAGCAGGAGTCTCCTTCCAGCATTACAGTCAGTTTTCCAGTTCCCTGATGTCTGGATCATAGATCTCTCAAAGAGAAAGACCTCTGTCCTCATGGAAGTGCTGAATCTGCAAGCAAATAAGAAACCACTAGAGCTGAGAAGATGTTCAGAGAAAAAGAGTAAAGTGAGGAGATTGCTCCAGTGTCTGCCCTTCATCTCACAGCTCAGACCATCCGAAAGGGCTCTTCAGAAGCTGCTTGAGCACATCTTTgaatttcaaaatgaaaaatcaACTCAACACTTCCTGCAGAGATTAAATGGAGATCTGACTTCCTGCTCCTTGACCTGGGAAGAGCTTCGTTATTTTTTGCAGcacagaattaaaaaaatcacTGTGGACCTCAGGAAGAGCAACATTCAGTGCAAAATGAGAGAAATTCTGCCACTTCTAAACAGGATTAAATTAAAAGGGTAAAGCACACGATTAATAAGTTGTTTTTTAAGAGCTGCATGTAAAAACTCTTTAAACAT
>TCONS_00049684
TCTGCCCTTCATCTCACAGCTCAGGTAAGACAATCTACTGCAACATCattaagcagggctgagcctggtcagtacctggatgggagaccacacggGTAAAAACAAGGTTaatgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091318 ENSDARG00000117322

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049683 False 2040 lncRNA 0.42 3 14242119 14248150
TCONS_00052330 False 795 lncRNA 0.38 2 14244198 14248538
TCONS_00049684 True 119 rRNA 0.48 1 14244666 14244784

Neighbor

gene id symbol gene type direction distance location
XLOC_025147 NA coding upstream 39600 14201043 ~ 14202519 (+)
XLOC_025146 si:ch211-108d22.2 coding upstream 53097 14157090 ~ 14189022 (+)
XLOC_025145 NA coding upstream 168349 14028243 ~ 14073770 (+)
XLOC_025144 syce2 coding upstream 306282 13929860 ~ 13935837 (+)
XLOC_025143 ilf3b coding upstream 341045 13842554 ~ 13901074 (+)
XLOC_025149 NA coding downstream 2706 14251244 ~ 14254765 (+)
XLOC_025150 si:ch211-108d22.1 coding downstream 10577 14259115 ~ 14260797 (+)
XLOC_025151 NA coding downstream 29112 14277650 ~ 14287841 (+)
XLOC_025152 plppr2a coding downstream 69264 14317802 ~ 14373165 (+)
XLOC_025153 tlcd4b coding downstream 139472 14388010 ~ 14452325 (+)
XLOC_025429 BX649540.1 misc downstream 16000201 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 764246 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 828906 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 835796 13406226 ~ 13406323 (+)
XLOC_025154 CU639471.1 non-coding downstream 150687 14399225 ~ 14399652 (+)
XLOC_025164 NA non-coding downstream 981414 15229952 ~ 15231838 (+)
XLOC_025169 NA non-coding downstream 1256646 15505184 ~ 15506157 (+)

Expression


Co-expression Network