XLOC_025149


Basic Information

Item Value
gene id XLOC_025149
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14251244 ~ 14254765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052331
TTTCAATCAGAGCTGGTACGGTTGACCTGAATGTGTTCTGAttaagtttttgtgtgtgttcagtgtggaCAGGCTGCTGTTACTGAAGATGCTTCACTGCTACAGTGTCTCTGATGTCCAGCAGGGGTCAGTGTTTCTGCTCTCCGCTTTGCAGCACAAGCTGGACTTCTCCTGCTGCTCTGCACTGGATCTGACCACAAACACAGACTCTGAGCCTCTACAACTCACAGCTGATGACTGCCGTGTGATATCCAGAGTCATTCAGAGAGCAAAcacagacagaaaaacacagcTGATTCTGAAGGACTGTGAGATTAACACTGCAGGAATGGACCAGCTGTTTACAGTGCTGCATTCAGTGAAACTCTGGTGAAAAACAGCAACAGATTCTTTGCGATattcttgtgtttgttttgagctTATATTTTATCAACAGATGGActttatgctttacaaacagcAGTACTCCAATTCATTACACATACCACTcgaacaaaaataattaataataaagttaGAAAAAGGGCGACAAATCTCACAAGAAAAGTTTGTTTTTGTGGAAAAACGTGTTTAACTTATACAAATTCTTATGATATAGAAAATTTAAAGGCGGGTAGTTATTTGTTGAAGCATGTATTAAGCCATCTTTAACTATCAGCAATGCTTATAATGTTTATAGCTAGCATATGCTGTTTTTCTCCAACAGAGTTAGCCAAACACTTTCTCATGAGCATTTGAGGGTATAGTTAAAAGCTAGCCTACAGCACTATTTCCTGTTAAAAACTAAGCACAGAACCGATTCCAGAGAGAATTGCTATGCGTTTACAATATGCATCTATTTACTGCCTCAGCCCCAGTGTGAACATTCAGAAATGTATCATATTTTGCTGTTGTCTTTCAGCTGTGCTAAACCTCTCCTGCTTCAGTTTCTGGCTCATGTGAGGCGCTGGCAGGCCGAATCTCTTTCTGCAGCTCTGGGTAAAGAGCTGGACCTCAGTCAGACTCCACTGGACCTGCAGGCCTGTAGAGGTTTGGCGCTGATTCTGGAATATTCTGAAGGACTGACTGAACTGGATCTGAGTCAGTGTCATCTCACCGATCACAGCCTGGATCTGCTGCTCCCAAACCTCCACAAAGCACAAAACATCGACTTTAGTGGGAATTACATCACTGATTTAGGGGCCCAGAAAATCCACCGTGTCGTCTCTCACAACAGTAACGTAAAGACAGTGAGGCTCTTCAACAACAGAATTGAATCCAAAGAGCTTTTTAAAGCCCCACAGTTTGAGATCTGGTGATGTCAATAAACTCTTATATATGAAACGTATATCAACAAGCATATTGATAATAAGGTAAAAACTATGTCCCAAAGGTGAATCTAGTCACCAGATAATAAACCACATTCATCTTTTATCATCAGCTTGAGTAATGATCAACAATGGGTTGTTCTATAAAGTGAGTTTAATTAAATGACAGTATCTTTATACTGCTTTATATTGTTTGACATACTCTGTATAGTTTGaatttagtttaatatatttatttaaattttatacaatttattatattcatattcgTGTAGTTCATTCTGTGTTCTGTTTGTTCTAACTGGTAGGTAATTTTAGATTTAGACTGTTTTTAGCGTAAATATTTAACAGATTAAAGATTTCAGCTCAGACAGCCAAAGCAAACAGCTTCAGGTAAAAGAGAgcttatttaaatactttattcaAAGTAAAAATGCTGTTATGTTTACTGGATGTGTATCCTGAATGAGCTACATTCATGTTGTGTTTACAAATGACAACAGTTTTGGATGTAATCCGTTTTCAGGTGACGTGAACCCAACACATCAACTCTGACCTCATTTACATGCACATTCATTTCTGATTAAGGTCCATGATTTCTTTTATTCTGCCTTTATTGGTGATCCACAAACTATTGAAATATTCATGTTTTTCTGTCTGAGTTCTAGTGGTCAATGCTGACAAAATACAAATGACATGATACTCAGGAAATCACTTTTACCTCATTAATGTGACTGACATGTTAGTTATTGTAGGTAAAACTTCTGTTTTTATCACATTATAATATTTTCCTGATTATATTTTTGCtttagttttgtctttttttaactttttaaaaattacttaactgtgtttttgatttgttttatgtaGTAGAGTAGTCTAAAGTGGTCGAGATGCACATTATAGGGAAGAAAAGGGCACTTGCAAGGGCGTCACCAGAGAGTTTTAAACAGAGGTACTGAGGGGATGCTATATATTACTGATGGGGAGCTGGGCGGTACTAATATATATCAGCAAAACAGGTCCTTTctacttgatttttttatttatcataatattttattcatcacAATCTAATCAAGGATTTTCATTTATGTAATTAACCAACGTCAAGCAAGTTGCTGTACCTATGTTGTGTTATTTACATTGTTACATTTGCATTGTGTGCTTCGCtggacatttaattaaaataaaatgtgaaactTGATCTGTTTGAGAGCAT

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0015031 protein transport biological_process
GO:0042886 amide transport biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052331 True 2532 lncRNA 0.37 3 14251244 14254765

Neighbor

gene id symbol gene type direction distance location
XLOC_025148 AL954138.2 coding upstream 2706 14242119 ~ 14248538 (+)
XLOC_025147 NA coding upstream 48725 14201043 ~ 14202519 (+)
XLOC_025146 si:ch211-108d22.2 coding upstream 62222 14157090 ~ 14189022 (+)
XLOC_025145 NA coding upstream 177474 14028243 ~ 14073770 (+)
XLOC_025144 syce2 coding upstream 315407 13929860 ~ 13935837 (+)
XLOC_025150 si:ch211-108d22.1 coding downstream 4350 14259115 ~ 14260797 (+)
XLOC_025151 NA coding downstream 22885 14277650 ~ 14287841 (+)
XLOC_025152 plppr2a coding downstream 63037 14317802 ~ 14373165 (+)
XLOC_025153 tlcd4b coding downstream 133245 14388010 ~ 14452325 (+)
XLOC_025154 CU639471.1 coding downstream 144460 14399225 ~ 14399652 (+)
XLOC_025429 BX649540.1 misc downstream 15993974 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 773371 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 838031 13406451 ~ 13413213 (+)
XLOC_025164 NA non-coding downstream 975187 15229952 ~ 15231838 (+)
XLOC_025169 NA non-coding downstream 1250419 15505184 ~ 15506157 (+)
XLOC_025170 NA non-coding downstream 1262787 15517552 ~ 15517899 (+)

Expression


Co-expression Network