G575570


Basic Information

Item Value
gene id G575570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12475783 ~ 12478768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU656358
agccaaagagGTAaattgagccacccttgtttctaggaaactatACATAAAATGttataatttgaccaaatatctaggaagaggtcatcatttcatggagtctgaagGAAGAAACCATTTGGAAAAAgctaagtaaaaaaatatatataaaaaataaaataaaagattttcaccaagtcaaattccTTTCTGTTatagaggtttcatgatgcttgtatctaaagcAAAGTAGATAACTTTAAGATTATTCTATACACCAGCATGAAAGTGctttattgtatgtgtgtgtgctaatataatcaaaatgtttgccttggggtaaaaGTTGAaccaatggcaagttgagcaaattgaagtgttttcATTCCAGGCACAATGCAAGGCATTATCGCTGGGATATGAGATAACAGGACCTGGccaatgtttaaaaatatatatataaaactacaAAGTGTTTGAACCTAAGTACTGAACGTAaaaaatggctcaacttaccccactctcccgtAAGCAAAACTATACACAAAATGATCGCTAAAACACTTCCTGACACAAGGTGCATTGAATTACTCACTGGCAACAAGCAtaacttgttcccaactggcctacctggttaaataaaggtgacatttaaaaaataaaagtcCACTGATATGGTTAGTTTGAAGGCCCTAAAACAATTGGCATCTGCTTTGTTCACAAGCAATCGCTGATTAAACCTAAGACAGTGGGAGTGTAGTGAACATACACACGAAGGGCTTCATTTAGAAAATCTTTTCACTCTTCAAATAAAAATATTCAGGAAGATTCAGCAGCCCCAAAATGCATCCTGTCATGTGTCTACTTAATCTAAAGCAATGCTAATGTGATCACATAGTAATCATGATCCTGTGGGGCACACCTCTCTCACTGGAGGACTTCTGTACAGCTAACAATAGACACACAGATTCAAAAATATGGTTTTCGCTAATCAATACAATTGCAGCAACTGTCGAGAATTCCTAATGATCGCAAACAGTGAATCATTTGCTGAATATAAACAGGCTATTGTTCCATCAGTAGAAGAAGTAGTCCAGTAGAATTAGACTGTTTCTGTAGATCATTTCCTATTGGTCCCCTCTACTTGAAATTATTATTTTCTCAGTCAGAGTTACGAAAACAAACGTGCTTCAACATTATCAGGGAACATATGATTACCCTGTATTTGGAAACCTCTGAACATAATCAACAGTGGATAACACCATTTGGGATGTTTCTGGGATAAGAAGAGCAAAGCAGCCACTACATAGTACATGTCAACAGTCTCTCTGAGAACATTAGGCTGACAACTAGGCCCAAACTCTGACtattaaaaacaaaacactgtTTGAGTGAGAAGTAGGGATTGGTCTAAAGCCGAAAAATAAAATTCCTTAAATTGACCTACGCCAGTAGCTATATGCTGGTCTATTGTACTTCGAAACAATGTTgaggcaggttgcttaggatgTAAACCTTCCCAAACAGCCTAATTCATTCTGTTAGAGGTGCTCCCGCAATAATGTGATTTGTACCGCATACAAGGTCATGTATTGCTACTTacaagcagtggtgtaaagtacttaaaaaTACTTAAgaagtatctgtactttactatttatatttttgacaaattttacgtcactacattcctaaagaaaataatgtacattttactccgtacattttccctgacacccaaaagtactcgttacattttgaatgcttagcaggacagaaaaattgtcaaattcacacttatcaagagaacaaccctggtcatctctactgcctctgatctggcagactcactaaacacaaatgatgtctcagtgttggagtgtcccCCTGGCTACTGATGAAGAAAAAATGCAATTGtgacatctggtttgcttaataagtAATTTGAAATCATTTATACTCTTACTTTTTAATACTTAAgtttatttaaaaccaaatacttttagacttttacttgagtcatttctatgaaggtatctttactttaaagTATGACAAGTTGGTACTTTTCCCACCGCTGCTTACAAGACCATTAGGGTTGATCGAGTGAGCTTTTTATATTATCTTGTAGTAATGTAGGTGGGCCCTGCCTGTAATTCTTTAAAAACATtgagaaaaaaatatgtattcCATAATAACATCCTTTTGGTGAACTGAATACACGTTGGATATAACGGATAAGGCACTAAGGGCTGAGAACAGTGACTGTTCACTAACACTGGTAAACTACACTCCCCCAACACATCCAACGAAGTGTCACGAGGTCTCGACTCACCTCTAAGTCTCATCTGTCCTTGTGCAGTCGTGTGGAAACCGTAGCGAGAGATTCCCAGACCGTTTAGACAACTCAATGTTAGTGTAAGGGGTTTAGGTGTTGATGTAAAGATGACAATGTTCAAGGGATAGTTGAGGATTTTGGCAAGGagaccctttatctacttccacacagtcagatgaactcatggatagcatttgtatgtctctgcatccagtatgaaggaagttagaggtagtttcgcgaTCCAATGCCAACTAGCGTTAGCTAGCGCAATGACATGAAGTCTACATGAACAACTTGCATGCTAGCTGTTCcgatagacttccagtcattacgCTAATGGTAGTTAGCAATTTGGCTAACGCTAGGTAGCAaattccttcaaactgcatgcagataCATAAAAATAGTCTCCAcgagttaatctgactctggggaagtagataaagggcttcattgccaacaTTCTGGAATATCCCTTTCAGGCCTTCACGTTGTTCCCATTGGACAGAGGTTCCGTCTCCGAGGGGTTTGATGGTACGGGACATAGCTCAGTGGGCGTGGCCTGGTCGGTGTCCCCTCCACCTCCTGCCGATTGGTTCCTGTAGTGGCGAATGATGACCCAGGCAGCACAGCCCAGGTAGATAACTGTCAGCAAGGCAAAGTAGA

Function

NR:

description
folate transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU656358 True 2986 lncRNA 0.39 1 12475783 12478768

Neighbor

gene id symbol gene type direction distance location
LOC110528829 LOC106574706 coding upstream 1644 12400616 ~ 12474139 (+)
LOC110528846 LOC106574744 coding upstream 111739 12353848 ~ 12364044 (+)
LOC110528723 LOC106592612 coding upstream 122919 12287588 ~ 12352864 (+)
LOC110528835 LOC106575602 coding upstream 200251 12259944 ~ 12275532 (+)
LOC110528831 LOC106574695 coding upstream 219670 12213138 ~ 12256113 (+)
LOC110528838 LOC106575524 coding downstream 9133 12487901 ~ 12520663 (+)
LOC110527307 LOC106575529 coding downstream 70433 12549201 ~ 12556506 (+)
LOC110527093 NA coding downstream 89408 12568176 ~ 12568569 (+)
LOC110527308 fam171b coding downstream 106788 12585556 ~ 12594004 (+)
LOC110527311 LOC106575461 coding downstream 142095 12620863 ~ 12693768 (+)
G575614 NA non-coding upstream 13276 12462230 ~ 12462507 (+)
G575612 NA non-coding upstream 18038 12457342 ~ 12457745 (+)
G575568 NA non-coding upstream 22724 12399700 ~ 12453059 (+)
G575565 NA non-coding upstream 78899 12396670 ~ 12396884 (+)
G575564 NA non-coding upstream 79872 12395684 ~ 12395911 (+)
G575616 NA non-coding downstream 439 12479207 ~ 12479912 (+)
G575617 NA non-coding downstream 1228 12479996 ~ 12480264 (+)
G575618 LOC106574707 non-coding downstream 1576 12480344 ~ 12481332 (+)
G575619 LOC106574707 non-coding downstream 5186 12483954 ~ 12484664 (+)
G575752 NA non-coding downstream 47460 12526228 ~ 12526530 (+)
LOC110497002 il8r other upstream 640468 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 725628 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 977867 11496553 ~ 11498867 (+)
G574754 NA other upstream 987279 11485253 ~ 11488504 (+)
G575758 NA other downstream 63249 12542017 ~ 12542481 (+)
G576160 NA other downstream 694016 13172784 ~ 13173074 (+)
G576161 NA other downstream 694544 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 1007748 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1636568 14115016 ~ 14116345 (+)

Expression


Co-expression Network