G575618 (LOC106574707)


Basic Information

Item Value
gene id G575618
gene name LOC106574707
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12480344 ~ 12481332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU656416
CACCCAGTAGTGTGGAGACAGCCTCCACCCCTCCGTTGTAGACGTGTTTGTTCTCAATGGCGGGGTACACCTTGTTCCACAGGACATGGACGTACAACAGCACCAGGTAGTAGCCAGCGGAGTTGAACACCCACCACAGGCTCCACAGTCTCAGGCTGGGCCTCCGCGGCACGTTCCTCAGCTCCTTCAGCATCTGAATAAACACTGAGTCCCTCCAGGAGGAACCAGAGCTGAGAGGGGCCAGGGAGGGTGTGTCACCTGAACCCAAGCCCGCTTCGCCCTGCTTCATCCTGGCCAGCTCCGACTGGGCGGCAGCCTGCTCCTGGAGGTTCCTCTGGGCAGCGTGGTGGGCCCTGTTGAAGAACAGGGACCTCTTGGGCCAGGGCAGGCAGCAGGAGAGCACCAGGCCGAAGGACACCAAGGCCAAGGAGACAGCACTGAGCATGGCGAAGGAGAGCCTGCCCACGGATATCAGCACCTGGCCCAGCACCGAGCTAGCAAACACCCCCATGAGGACGCAAGAGCGCGAGTAGCTGGCCACACGTTGGTAGAGCTCTGGGGTGACCAGGGAGAATATGTAGGAGGAGTAAGCCACGCGTGCTGCCATGGTGATACCGTAGAAGAACTCCATGAACTGCATCTCTAAGAGGGAGGAgcccaggaggaggaggagccagaTGGCCACGTGGCTGAGGCTGGAGAGGACCAGGACGGGCTTGTAACGCAGGACGTCTGTCAGGAGGAAGACTGGCACCAGCACCGCCATGTAGGAGTAGGACAGGATCGGGTTGATCTC
>TU656414
GGCGGGGTACACCTTGTTCCACAGGACATGGACGTACAACAGCACCAGGTAGTAGCCAGCGGAGTTGAACACCCACCACAGGCTCCACAGTCTCAGGCTGGGCCTCCGCGGCACGTTCCTCAGCTCCTTCAGCATCTGAATAAACACTGAGTCCCTCCAGGAGGAACCAGAGCTGAGAGGGGCCAGGGAGGGTGTGTCACCTGAACCCAAGCCCGCTTCGCCCTGCTTCATCCTGGCCAGCTCCGACTGGGCGGCAGCCTGCTCCTGGAGGTTCCTCTGGGCAGCGTGGTGGGCCCTGTTGAAGAACAGGGACCTCTTGGGCCAGGGCAGGCAGCAGGAGAGCACCAGGCCGAAGGACACCAAGGCCAAGGAGACAGCACTGAGCATGGCGAAGGAGAGCCTGCCCACGGATATCAGCACCTGGCCCAGCACCGAGCTAGCAAACACCCCCATGAGGACGCAAGAGCGCGAGTAGCTGGCCACACGTTGGTAGAGCTCTGGGGTGACCAGGGAGAATATGTAGGAGGAGTAAGCCACGCGTGCTGCCATGGTGATACCGTAGAAGAACTCCATGAACTGCATCTCTAAGAGGGAGGAgcccaggaggaggaggagccagaTGGCCACGTGGCTGAGGCTGGAGAGGACCAGGACGGGCTTGTAACGCAGGACGTCTGTCAGGAGGAAGACTGGCACCAGCACCGCCATGTAGGAGTAGGACAGGATCGGGTTGATCTC
>TU656417
GGCGGGGTACACCTTGTTCCACAGGACATGGACGTACAACAGCACCAGGTAGTAGCCAGCGGAGTTGAACACCCACCACAGGCTCCACAGTCTCAGGCTGGGCCTCCGCGGCACGTTCCTCAGCTCCTTCAGCATCTGAATAAACACTGAGTCCCTCCAGGAGGAACCAGAGCTGAGAGGGGCCAGGGAGGGTGTGTCACCTGAACCCAAGCCCGCTTCGCCCTGCTTCATCCTGGCCAGCTCCGACTGGGCGGCAGCCTGCTCCTGGAGGTTCCTCTGGGCAGCGTGGTGGGCCCTGTTGAAGAACAGGGACCTCTTGGGCCAGGGCAGGCAGCAGGAGAGCACCAGGCCGAAGGACACCAAGGCCAAGGAGACAGCACTGAGCATGGCGAAGGAGAGCCTGCCCACGGATATCAGCACCTGGCCCAGCACCGAGCTAGCAAACACCCCCATGAGGACGCAAGAGCGCGAGTAGCTGGCCACACGTTGGTAGAGCTCTGGGGTGACCAGGGAGAATATGTAGGAGGAGTAAGCCACGCGTGCTGCCATGGTGATACCGTAGAAGAACTCCATGAACTGCATCTCTAAGAGGGAGGAgcccaggaggaggaggagccagaTGGCCACGTGGCTGAGGCTGGAGAGGACCAGGACGGGCTTGTAACGCAGGACGTCTGTCAGGAGGAAGACTGGCACCAGCACCGCCATGTAGGAGTAGGACAGGATCGGGTTGATCTCATTGGTCACCTGGAGGAAGAGAATGGCGGGTATGAGAGGGGGAGACCACATAGAAGAGACAGAGGACTCAGTGGAATCCAGTTCTCCTTGTAAAAAGTTGCAAAAACCTTCACTGATCACCTTCATTTGAACTAATGCTACATTGTAGGCAAGGACACCTTCCAATGAGTCTGCAGACGTCAGGCCATTAGGT
>TU656415
CCTGCTTCATCCTGGCCAGCTCCGACTGGGCGGCAGCCTGCTCCTGGAGGTTCCTCTGGGCAGCGTGGTGGGCCCTGTTGAAGAACAGGGACCTCTTGGGCCAGGGCAGGCAGCAGGAGAGCACCAGGCCGAAGGACACCAAGGCCAAGGAGACAGCACTGAGCATGGCGAAGGAGAGCCTGCCCACGGATATCAGCACCTGGCCCAGCACCGAGCTAGCAAACACCCCCATGAGGACGCAAGAGCGCGAGTAGCTGGCCACACGTTGGTAGAGCTCTGGGGTGACCAGGGAGAATATGTAGGAGGAGTAAGCCACGCGTGCTGCCATGGTGATACCGTAGAAGAACTCCATGAACTGCATCTCTAAGAGGGAGGAgcccaggaggaggaggagccagaTGGCCACGTGGCTGAGGCTGGAGAGGACCAGGACGGGCTTGTAACGCAGGACGTCTGTCAGGAGGAAGACTGGCACCAGCACCGCCATGTAGGAGTAGGACAGGATCGGGTTGATCTC
>TU656418
CCTGCTTCATCCTGGCCAGCTCCGACTGGGCGGCAGCCTGCTCCTGGAGGTTCCTCTGGGCAGCGTGGTGGGCCCTGTTGAAGAACAGGGACCTCTTGGGCCAGGGCAGGCAGCAGGAGAGCACCAGGCCGAAGGACACCAAGGCCAAGGAGACAGCACTGAGCATGGCGAAGGAGAGCCTGCCCACGGATATCAGCACCTGGCCCAGCACCGAGCTAGCAAACACCCCCATGAGGACGCAAGAGCGCGAGTAGCTGGCCACACGTTGGTAGAGCTCTGGGGTGACCAGGGAGAATATGTAGGAGGAGTAAGCCACGCGTGCTGCCATGGTGATACCGTAGAAGAACTCCATGAACTGCATCTCTAAGAGGGAGGAgcccaggaggaggaggagccagaTGGCCACGTGGCTGAGGCTGGAGAGGACCAGGACGGGCTTGTAACGCAGGACGTCTGTCAGGAGGAAGACTGGCACCAGCACCGCCATGTAGGAGTAGGACAGGATCGGGTTGATCTCATTGGTCACCTGGAGGAAGAGAATGGCGGGTATGAGAGGGGGAGACCACATAGAAGAGACAGAGGACTCAGTGGAATCCAGTTCTCCTTGTAAAAAGTTGCAAAAACCTTCACTGATCACCTTCATTTGAACTAATGCTACATTGTAGGCAAGGACACCTTCCAATGAGTCTGCAGACGTCAGGCCATTAGGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU656416 False 796 lncRNA 0.61 1 12480344 12481139
TU656414 False 738 lncRNA 0.61 1 12480402 12481139
TU656417 False 931 lncRNA 0.58 1 12480402 12481332
TU656415 False 517 lncRNA 0.62 1 12480623 12481139
TU656418 True 710 lncRNA 0.57 1 12480623 12481332

Neighbor

gene id symbol gene type direction distance location
LOC110528829 LOC106574706 coding upstream 6205 12400616 ~ 12474139 (+)
LOC110528846 LOC106574744 coding upstream 116300 12353848 ~ 12364044 (+)
LOC110528723 LOC106592612 coding upstream 127480 12287588 ~ 12352864 (+)
LOC110528835 LOC106575602 coding upstream 204812 12259944 ~ 12275532 (+)
LOC110528831 LOC106574695 coding upstream 224231 12213138 ~ 12256113 (+)
LOC110528838 LOC106575524 coding downstream 6569 12487901 ~ 12520663 (+)
LOC110527307 LOC106575529 coding downstream 67869 12549201 ~ 12556506 (+)
LOC110527093 NA coding downstream 86844 12568176 ~ 12568569 (+)
LOC110527308 fam171b coding downstream 104224 12585556 ~ 12594004 (+)
LOC110527311 LOC106575461 coding downstream 139531 12620863 ~ 12693768 (+)
G575617 NA non-coding upstream 80 12479996 ~ 12480264 (+)
G575616 NA non-coding upstream 432 12479207 ~ 12479912 (+)
G575570 NA non-coding upstream 1576 12475783 ~ 12478768 (+)
G575614 NA non-coding upstream 17837 12462230 ~ 12462507 (+)
G575612 NA non-coding upstream 22599 12457342 ~ 12457745 (+)
G575619 LOC106574707 non-coding downstream 2622 12483954 ~ 12484664 (+)
G575752 NA non-coding downstream 44896 12526228 ~ 12526530 (+)
G575767 NA non-coding downstream 69491 12550823 ~ 12552425 (+)
G575804 LOC106575526 non-coding downstream 113846 12595178 ~ 12595925 (+)
G575805 NA non-coding downstream 114650 12595982 ~ 12596239 (+)
LOC110497002 il8r other upstream 645029 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 730189 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 982428 11496553 ~ 11498867 (+)
G574754 NA other upstream 991840 11485253 ~ 11488504 (+)
G575758 NA other downstream 60685 12542017 ~ 12542481 (+)
G576160 NA other downstream 691452 13172784 ~ 13173074 (+)
G576161 NA other downstream 691980 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 1005184 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1634004 14115016 ~ 14116345 (+)

Expression


Co-expression Network