XLOC_025152 (plppr2a)


Basic Information

Item Value
gene id XLOC_025152
gene name plppr2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14317802 ~ 14373165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049686
ttttttatgtgTGAAGAATAAAGTGGGAGCATGAGAGGAGGATCAGAGCAGAAAGGAGGAGGATCTACAATGGCAGCAGAAGAGAAACCTGCTGTGAAGAGCAGCAGCTCCATTATACCATGTTTCCTATTTGTGGAGcTGGTGATCATGGCAGGCACCGTGCTCATGGCGTACTACTTTGAATACACGGACACCTTCCCCGTGCACATCCAGGGCTTCTTCTGCTTCGACAAGGCGTTCTCCAAACCGTACCCGGGACCGGATGAGACCAGCAACGTGCCGCCGGTGCTCGTGTACTCGCTGATAGCTGCTATTCCCACTATAACCATTTTGGCTGGTGAGGTGATGGTGTTTTTCATGAGGGCGGAGGGCACGCAGGAGAAGACAATCGTCACTGCAGACTGCTGTTACTTCAACCCTCTGCTGAGGCGCATCATACGCTTCCTCGGTGTCTACACCTTTGGCGTCTTCACCACCACTATCTTTGCGAACGCCGGACAGGTAGTGACAGGAAACCAGACGCCTCACTTCCTGTCGGCATGCAGACCAAACTACACAGCACTGGGCTGCCATTCAAACCTCCAGTACATCACCGAACGCAAAGCCTGCACCGGAAACCCGCTCATAGTGGCGTCTGCCAGAAAATCCTTCCCCTCCAAGGACGCAGCGCTCAGTGTTTACTCTGCAGTGTACACTGTGATGTATGTGACGCTGGTGTTCAGGACTAAAGGGACGCGTCTGACCAAACCCACACTCAGTCTGACTCTGCTGTGTCTGGCCATGTTGGTGGGTGTTGTTAGAGTGGCTGAATACCGAAACCACTGGTCGGACGTCCTCGCCGGATTCTTCACCGGTGGAGCCATCGCTGTGTTTCTGGTGACATGCGTGATCAACAACTTCCAGCAGACAAAGCCTCCTCCCCCGGCGGTGCGAGTCCAGCGGCCTGAGTCTGTTCTGGGCATGCCCATGGTGGCGCTGCCCTGCGTTGAGAGTCCACTTGAAAAACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCCTCATCGGTTCCCCGTCCCCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCCAGCACGCGCACCACTGCGCCGCCCACTCCGCGGGACGCTCCAACAACCTGCAGCGCTCCTACTCCACGCAGGTCTAGATTTCCACACCTCCAACCCCTCATCCTCCATACTCCTCCATGCTGCCGATAGGGCCTCCACAAACCGCTCAAACAAGCACTTTTAGAGAGCCTGCTCCAAGAACGCAAGAGACCATGGGCAGGCGTCATGGTCTTGCCGGAGagtttgtttggactgtgggtggaGGATGCGCACCTGCTCAGACCTCTCGAAACCAACCCGACCTACTTCCTGGGGAACCGATGAAGAAATCTCGATCAGCTTTTGGCTGACTCGCAAAAACTTGATTTTTACTGAAAGTGTCAAATGTTTTCGTTCTTATGTACTGTAAATACATTGTGTTTCTTGTTC
>TCONS_00049687
TTGTGTCTCCTCGGATTCCAGTTCACGCTGTTTTTCTCCACATCTTTTCCCCGTTTTTCCGCCGTGTTCGCGCGCGCTCTGAGGAACAGCATGTAACACTGTCAGGATCACGAcgcctgtgtgtatgtgtgtgattgtgtgtgccCGTGTGGTTTATGCGGTCGCACGCGCGCTGTGGCGGAGCGTCTTCTGCACTAGTAATAAAGCGtggatcatgttttattttcagcTGGTGATCATGGCAGGCACCGTGCTCATGGCGTACTACTTTGAATACACGGACACCTTCCCCGTGCACATCCAGGGCTTCTTCTGCTTCGACAAGGCGTTCTCCAAACCGTACCCGGGACCGGATGAGACCAGCAACGTGCCGCCGGTGCTCGTGTACTCGCTGATAGCTGCTATTCCCACTATAACCATTTTGGCTGGTGAGGTGATGGTGTTTTTCATGAGGGCGGAGGGCACGCAGGAGAAGACAATCGTCACTGCAGACTGCTGTTACTTCAACCCTCTGCTGAGGCGCATCATACGCTTCCTCGGTGTCTACACCTTTGGCGTCTTCACCACCACTATCTTTGCGAACGCCGGACAGGTAGTGACAGGAAACCAGACGCCTCACTTCCTGTCGGCATGCAGACCAAACTACACAGCACTGGGCTGCCATTCAAACCTCCAGTACATCACCGAACGCAAAGCCTGCACCGGAAACCCGCTCATAGTGGCGTCTGCCAGAAAATCCTTCCCCTCCAAGGACGCAGCGCTCAGTGTTTACTCTGCAGTGTACACTGTGATGTATGTGACGCTGGTGTTCAGGACTAAAGGGACGCGTCTGACCAAACCCACACTCAGTCTGACTCTGCTGTGTCTGGCCATGTTGGTGGGTGTTGTTAGAGTGGCTGAATACCGAAACCACTGGTCGGACGTCCTCGCCGGATTCTTCACCGGTGGAGCCATCGCTGTGTTTCTGGTGACATGCGTGATCAACAACTTCCAGCAGACAAAGCCTCCTCCCCCGGCGGTGCGAGTCCAGCGGCCTGAGTCTGTTCTGGGCATGCCCATGGTGGCGCTGCCCTGCGTTGAGAGTCCACTTGAAAAACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCCTCATCGGTTCCCCGTCCCCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCCAGCACGCGCACCACTGCGCCGCCCACTCCGCGGGACGCTCCAACAACCTGCAGCGCTCCTACTCCACGCAGGTCTAGATTTCCACACCTCCAACCCCTCATCCTCCATACTCCTCCATGCTGCCGATAGGGCCTCCACAAACCGCTCAAACAAGCACTTTTAGAGAGCCTGCTCCAAGAACGCAAGAGACCATGGGCAGGCGTCATGGTCTTGCCGGAGagtttgtttggactgtgggtggaGGATGCGCACCTGCTCAGACCTCTCGAAACCAACCCGACCTACTTCCTGGGGAACCGATGAAGAAATCTCGATCAGCTTTTGGCTGACTCGCAAAAACTTGATTTTTACTGAAAGTGTCAAATGTTTTCGTTCTTATGTACTGTAAATACATTGTGTTTCTTGTTCG

Function

symbol description
plppr2a Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PLPPR2 (phospholipid phosphatase related 2).

GO:

id name namespace
GO:0046839 phospholipid dephosphorylation biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0042577 lipid phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1171 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PLPPR2 (phospholipid phosphatase related 2).

Ensembl:

ensembl_id ENSDARG00000101478

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049686 False 1533 mRNA 0.54 7 14317802 14373164
TCONS_00049687 True 1625 mRNA 0.55 6 14339728 14373165

Neighbor

gene id symbol gene type direction distance location
XLOC_025151 NA coding upstream 29961 14277650 ~ 14287841 (+)
XLOC_025150 si:ch211-108d22.1 coding upstream 57005 14259115 ~ 14260797 (+)
XLOC_025149 NA coding upstream 63037 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 coding upstream 69264 14242119 ~ 14248538 (+)
XLOC_025147 NA coding upstream 115283 14201043 ~ 14202519 (+)
XLOC_025153 tlcd4b coding downstream 14845 14388010 ~ 14452325 (+)
XLOC_025154 CU639471.1 coding downstream 26060 14399225 ~ 14399652 (+)
XLOC_025155 cnn1b coding downstream 90776 14463941 ~ 14486959 (+)
XLOC_025156 tmem205 coding downstream 125910 14499075 ~ 14508761 (+)
XLOC_025157 rab3db coding downstream 139505 14512670 ~ 14537576 (+)
XLOC_025429 BX649540.1 misc downstream 15875574 30248739 ~ 30249036 (+)
XLOC_025145 NA non-coding upstream 244032 14028243 ~ 14073770 (+)
XLOC_025164 NA non-coding downstream 856787 15229952 ~ 15231838 (+)
XLOC_025169 NA non-coding downstream 1132019 15505184 ~ 15506157 (+)
XLOC_025170 NA non-coding downstream 1144387 15517552 ~ 15517899 (+)
XLOC_025172 NA non-coding downstream 1245113 15618278 ~ 15621754 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000333_00217413_00239071 PLPPR2A, PLPPR2B, PLPPR2 coding CI01000333 null 217413 ~ 239071 (+)