G576097


Basic Information

Item Value
gene id G576097
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13037873 ~ 13039421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU656993
tgaaggtggtGGGGTTGagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggttagggttcagggttagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggttagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcaaGGTTAAGGCTGTTGGGGATATGATGAGTTAAAAGCCCATACCCAAGAATCCATGACAGATTAGCTCATGTACTCAACGTTGATCAATAAACTTGATAGTGTCGAAATGAACCTTGTAATGGATGGGCGTGAGCTGGCACTAACAGATATCTGTGTGCGGTACAATGACACGATTCAGGGACACTAGGAAATGCTTATTGTAAAAACCAATCAATGAAAACTGCAACCTTTTCATATGGATAGCTGTTCCCTAGCCCAAATCATGATGTCACTGCACTCAGTTCGGACTTTGCACTTGAAGCTTTATCTTTTATCTGTGAGTTGTACTTGAAGTTCTGTTGAGTCAAGACTCACCCACTGAcatgtctgtttgcctgtctggCTGTCCGTCTGTATTTCTAGAAAGCCTGGAGGAGATTTTTCTTTAATGGATGAGGGAAGGGACCGTTCTCTCCAGAGGAGTTGCTTGGATGGACAAGACGGAGACATAAAGGTGATTGGAGGGATTAGAGAAAGAGAGCTTCTGATTGGACAAAGAGATTCTGACCTCCCACCTTCAGTA
>TU656995
tgaaggtggtGGGGTTGagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggttagggttcagggttagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggttagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcaaGGTTAAGGCTGTTGGGGATATGATGAGTTAAAAGCCCATACCCAAGAATCCATGACAGATTAGCTCATGTACTCAACGTTGATCAATAAACTTGATAGTGTCGAAATGAACCTTGTAATGGATGGGCGTGAGCTGGCACTAACAGATATCTGTGTGCGGTACAATGACACGATTCAGGGACACTAGGAAATGCTTATTGTAAAAACCAATCAATGAAAACTGCAACCTTTTCATATGGATAGCTGTTCCCTAGCCCAAATCATGATGTCACTGCACTCAGTTCGGACTTTGCACTTGAAGCTTTATCTTTTATCTGTGAGTTGTACTTGAAGTTCTGTTGAGTCAAGACTCACCCACTGAcatgtctgtttgcctgtctggCTGTCCGTCTGTATTTCTAGAAAGCCTGGAGGAGATTTTTCTTTAATGGATGAGGGAAGGGACCGTTCTCTCCAGAGGAGTTGCTTGGATGGACAAGACGGAGACATAAAGGTGATTGGAGGGATTAGAGAAAGAGAGCTTCTGATTGGACAAAGAGATTCTGACCTCCCACCTTCAGTAACAAGGATTCATCCTGTTGTTGTATTCTGAACTAGCAGGGAATCTCTGTTGCTGGGGGTGAGGGTACAGAGagctcacacaaacacattccGTCACACACACgaagacgcacacacagacacacacgtttgttattttactgcttacACTTCTCCTGTACTGTgctatgtatgtactgtatctaaTTTGATTAAAGATGTGAGAAGATGTTCTTGACTTCTGGGGTCTGTATTACTAACTAGACTATGATTGTGTGAGGAATTGCTTTACTCTGTGTTAAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTTAAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTTAAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGAAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGCAGGGAGACAGTATTGACTCAGTGTAGAGGTTTTGCAGGGAGACAGTATTGACTCAGTGTTAAGGTTTTGAAGGGAGACAGTATTGA
>TU656997
tgaaggtggtGGGGTTGagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggttagggttcagggttagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggttagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcaaGGTTAAGGCTGTTGGGGATATGATGAGTTAAAAGCCCATACCCAAGAATCCATGACAGATTAGCTCATGTACTCAACGTTGATCAATAAACTTGATAGTGTCGAAATGAACCTTGTAATGGATGGGCGTGAGCTGGCACTAACAGATATCTGTGTGCGGTACAATGACACGATTCAGGGACACTAGGAAATGCTTATTGTAAAAACCAATCAATGAAAACTGCAACCTTTTCATATGGATAGCTGTTCCCTAGCCCAAATCATGATGTCACTGCACTCAGTTCGGACTTTGCA
>TU656996
gaaggtggtagggttcagggttagggctagatgaaggtggtagggttcaaGGTTAAGGCTGTTGGGGATATGATGAGTTAAAAGCCCATACCCAAGAATCCATGACAGATTAGCTCATGTACTCAACGTTGATCAATAAACTTGATAGTGTCGAAATGAACCTTGTAATGGATGGGCGTGAGCTGGCACTAACAGATATCTGTGTGCGGTACAATGACACGATTCAGGGACACTAGGAAATGCTTATTGTAAAAACCAATCAATGAAAACTGCAACCTTTTCATATGGATAGCTGTTCCCTAGCCCAAATCATGATGTCACTGCACTCAGTTCGGACTTTGCACTTGAAGCTTTATCTTTTATCTGTGAGTTGTACTTGAAGTTCTGTTGAGTCAAGACTCACCCACTGAcatgtctgtttgcctgtctggCTGTCCGTCTGTATTTCTAGAAAGCCTGGAGGAGATTTTTCTTTAATGGATGAGGGAAGGGACCGTTCTCTCCAGAGGAGTTGCTTGGATGGACAAGACGGAGACATAAAGGTGATTGGAGGGATTAGAGAAAGAGAGCTTCTGATTGGACAAAGAGATTCTGACCTCCCACCTTCAGTA
>TU656998
gaaggtggtagggttcagggttagggctagatgaaggtggtagggttcaaGGTTAAGGCTGTTGGGGATATGATGAGTTAAAAGCCCATACCCAAGAATCCATGACAGATTAGCTCATGTACTCAACGTTGATCAATAAACTTGATAGTGTCGAAATGAACCTTGTAATGGATGGGCGTGAGCTGGCACTAACAGATATCTGTGTGCGGTACAATGACACGATTCAGGGACACTAGGAAATGCTTATTGTAAAAACCAATCAATGAAAACTGCAACCTTTTCATATGGATAGCTGTTCCCTAGCCCAAATCATGATGTCACTGCACTCAGTTCGGACTTTGCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU656993 False 895 lncRNA 0.46 1 13037873 13038767
TU656995 False 1549 lncRNA 0.45 1 13037873 13039421
TU656997 False 627 lncRNA 0.47 1 13037873 13038499
TU656996 False 611 lncRNA 0.44 1 13038157 13038767
TU656998 True 343 lncRNA 0.43 1 13038157 13038499

Neighbor

gene id symbol gene type direction distance location
LOC110527322 LOC106574731 coding upstream 125552 12900599 ~ 12912321 (+)
LOC110527323 LOC106575578 coding upstream 137696 12892819 ~ 12900177 (+)
LOC110528756 LOC106575580 coding upstream 151087 12866793 ~ 12886786 (+)
LOC110527317 LOC106590799 coding upstream 174309 12856454 ~ 12863564 (+)
LOC110527320 LOC106575532 coding upstream 187732 12844493 ~ 12850141 (+)
LOC110527327 LOC106575575 coding downstream 16036 13055457 ~ 13058826 (+)
LOC110527329 LOC106574721 coding downstream 36559 13075980 ~ 13090351 (+)
LOC100136184 LOC100136184 coding downstream 77732 13117153 ~ 13130917 (+)
LOC100136183 LOC100380633 coding downstream 96139 13135560 ~ 13149476 (+)
LOC110527332 LOC106575562 coding downstream 328208 13367629 ~ 13371986 (+)
G576096 NA non-coding upstream 3142 13033319 ~ 13034731 (+)
G576094 NA non-coding upstream 6904 13030734 ~ 13030969 (+)
G576087 NA non-coding upstream 68886 12968714 ~ 12968987 (+)
G576086 NA non-coding upstream 70374 12966900 ~ 12967499 (+)
G576085 NA non-coding upstream 72453 12965112 ~ 12965420 (+)
G576106 NA non-coding downstream 8160 13047581 ~ 13047805 (+)
G576107 NA non-coding downstream 10520 13049941 ~ 13050159 (+)
G576109 NA non-coding downstream 13439 13052860 ~ 13053184 (+)
G576173 NA non-coding downstream 151576 13190997 ~ 13212227 (+)
G576172 LOC106575469 non-coding downstream 161070 13200491 ~ 13358043 (+)
G575758 NA other upstream 495392 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 569122 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1202558 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 1287718 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1539957 11496553 ~ 11498867 (+)
G576160 NA other downstream 133363 13172784 ~ 13173074 (+)
G576161 NA other downstream 133891 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 447095 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1075915 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1106649 14146070 ~ 14159585 (+)

Expression


Co-expression Network