XLOC_025160 (tspan35)


Basic Information

Item Value
gene id XLOC_025160
gene name tspan35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14611299 ~ 14638399 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049702
GACGAGGGAGCGTCACGTCACGCCCACCTGTTCGCTGCATCCTCCTCTCTGTAGTAAAACAGCCGTTCACACTTCAGCAGATCATTCAGAGCAAGAGAAAACACGAGCAGGACGAAAACTTGTCTCTCACTTTCTCACTCAGGGATTTAACCGAGTCTATATCAAACATTTGACTAAAGgTTTCATATCCATCCAAGAAAATGGGTTGCTTTGGATTTTTGAAAACCATGATGTTTCTCTTCAATGGCATCATCTTTcTGGCAGGAGGGGTTATTCTGGGTGTGGGCATCTGGGTGAAGGTGGACAACGGCTCCATACTGAATTTTATGCAGAGTTTACCAGGCGCTTCGAGTCAGATGGGACAGGTGCTGAATGTGGGATACCTGCTGATCGCTTTGGGAGCTGTGCTAGTCGTCCTGGGCTTCCTGGGCTGCTGCGGAGCCGTCAAAGAGAGCAGGTGTATGCTGATGCTGTTCTTCATTATTATTCTGATCATCTTCATTGCTGAAGTTGCCGGGGCGATTGTGATTCTGGCGTTTAGGCCGCTGGCAGAAACGCTGATTAAACAGTTGGGAGTTGATGCTGTGAAAAGCCTCCAAAGTGACTTTGGGAAAAACCAAGACGTCACCGGATTGTGGAACACAACAATGACTGGGATGAAATGCTGTGGATTCAACAACTATACGGATTTCACAAACTCTTTTTTCGTGAACAGCACCAAGAATTATCCGGTGCAGTGCTGTAACACATCTCCATGTAATCAGGCGGCTGTTATGAATTCGACTGTCACAGGTTGTTTTCCAGCACTGATAAAGCTGGTGGATAAAAATGCCGTTATCATCATAGCCGTAGCATTGGGCATCGCTGCGCTTGAGCTTGCGGCGATGATCGTGTCCATGGTCCTGTACTGTAAAATAGGTTCAAAGGCTTAACGTGTCACTTTAATGGAAGTATCTGTCCAATGACCCCTCTTGATGATTGAGGATGAGGTGGAATATCGGTTGTAATGATTTCATTCTGGATAAGAATGACtgcttaaaagaatagttcacccaaaaggaCCAtttcctcattatttatttaacattcatgatttttgttcttctgttgaacattaagaaaaatattcagaataattttgggggaaaaataacATTGACATCAATTGttggggcaaaaaaaaaatactatggaagtcaatagttgttttgttttcaacattattcagtattttttctgttttgttcaacagaataaactaaatttgggTAATCTATGCTTTTAATACCTTGAATGAAAACTAAAGTCAGACTGTCAATCTGAAAATCTTGACATTTTACAGTAGTAAAATTAGCTATTTTAATGATTAACATTTCATTGAgactatgattattattattattttgtacttttttactTATATactctgttttattatttaaaagcataaaaccCAAGGCATTGCTTTGTAATTCTAAACACACTACTGTCATTATATGTGCAATGACCAAAATAGGCCAAATGTTTTCTAGCAAAATGTCGCTGTTGTAATTTATTGCAAACCTCTTACAAGCCAAAGGCATTTACACAACGTGACTTCTCATGTAATAAAGCacaatgttttatgtttaaaatgtgatgtataaagtttttaccaaaaaaaactgattattttatgttgctaaaatgttcatataaaatgtttattttgatgatAATTATAGATATAAAGGCAATTTCAACTTTG

Function

symbol description
tspan35 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in peripheral olfactory organ and pronephric duct.

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1362 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in peripheral olfactory organ and pronephric duct.

Ensembl:

ensembl_id ENSDARG00000025757

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049702 True 1747 mRNA 0.38 8 14611299 14638399

Neighbor

gene id symbol gene type direction distance location
XLOC_025159 znf653 coding upstream 5181 14571813 ~ 14606118 (+)
XLOC_025158 epor coding upstream 50203 14543953 ~ 14561096 (+)
XLOC_025157 rab3db coding upstream 73723 14512670 ~ 14537576 (+)
XLOC_025156 tmem205 coding upstream 102538 14499075 ~ 14508761 (+)
XLOC_025155 cnn1b coding upstream 124340 14463941 ~ 14486959 (+)
XLOC_025161 zgc:158403 coding downstream 3563 14641962 ~ 14688110 (+)
XLOC_025162 nfixb coding downstream 129965 14768364 ~ 15058464 (+)
XLOC_025163 tspan10 coding downstream 538338 15176737 ~ 15186292 (+)
XLOC_025164 NA coding downstream 591553 15229952 ~ 15231838 (+)
XLOC_025165 asphd1 coding downstream 633544 15271943 ~ 15284693 (+)
XLOC_025429 BX649540.1 misc downstream 15610340 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 211647 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 323458 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 356534 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 362761 14242119 ~ 14248538 (+)
XLOC_025147 NA non-coding upstream 408780 14201043 ~ 14202519 (+)
XLOC_025169 NA non-coding downstream 866785 15505184 ~ 15506157 (+)
XLOC_025170 NA non-coding downstream 879153 15517552 ~ 15517899 (+)
XLOC_025172 NA non-coding downstream 979879 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 1001053 15639452 ~ 15646667 (+)

Expression


Co-expression Network