G576171


Basic Information

Item Value
gene id G576171
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13333522 ~ 13336095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU657079
tgttaataataTAAACAAAATACTTCTATATGAGCGGCGAAAAATACTATGACAAAGATTCTCAGCAGCACCCCTTGTTATTTccatatttaaatatatttggtgTTTTTTGCAAAATAtacaacacacaaacaacacacaaacCACATACACTAGGATTAATGTACAACAATGGAAAATGATCATGTAAATATAAGTATACAAACAAGCAAATTCAGTTAAAATACAGTAGGCCTAGGGCATGGAAATTCCTCTGCTTGTTTACCTAATATCTTGACATGGGCATAACACTTGCTAGCAATAATTGTGTTCttaaatagaggagaggacaggtagAAGATCAGAAATATGCAGAGAAGAAGAGGGCAGCTTTGGACATACTAAACAAGATTAAAATAAACTAACGCTTGTAACGTTGCCACATtaaatgtgatacaaaacagaaTTAATGGTCATGCATGTATTCCTTACCACAAAGTGGATAATCTGTTCATTGGCCAGAAATGATACCTGTCAATTTAAGTATGTGGTCATGTGTGTGTAGGAAAGGGAAGagctaacttttttttttaaaggctatGGTGTGAGGAACAAAGAGGAAATGCTTTTTTGAAAACTTTGCAAGTAAAATAGCTCCGTAATGGTGTAGTTTAAACCTGTTCCACTGGATTATTTGCCATAAAAAGGGAAATGACTGGATTTAAGGACTTCCATTCAACACCACGGAATGATGAGTGTATCTGATTGAATGTGAATTGTTGATCGACTCTCCTGCTCTTACTATTggaatataatttatattttttgtggatttaccttttttGGGAAAGAACTGAACTGAATCTTGGGAATCCTGGATTTAAAGGACATTTTTGGTTGAACTGAATCTCTTTTTGACTTTGACCTTTGGACTACTGACAGTATTGACTATTCATTTGATTGCTGGTTATATCTGAGACAAGAAAGCCTTATTGCATCCAATGTTGAGTTGGTTTATGATTTGTTGCTGCTTCATTTCTAATCAAAGCTTTAATATGATGCCTTAAAGGTGCTTTGCTTTGTTGGGCTTGTGCATTTCTATACTTTCAATTTCAAAAAGGTCTTCTAGGGGTCAAACTATTGCTACACATTTCCCACTCCTTGTTTTTATAAAGCACACTTGTTTAGAAAGGACAAGTGACTGTTATAAATGGACCTCAGTTTCACCGAACACAAGCCAGTCTATTGCTATGGAAATGTTCTCTGAACGTTAGAATGCCTTGTCGTCCAGTGCTGGTAACTCAGGTGAGACGATGGGTTCTCTTGTCTTCATGATCCTCTGCGTACCTCTGGTCCACAGTTCCCTGTCTAGAGAGACGTCAGTTAGTAGGAACAAGAGTTGGTAACAGACTAATAGTCTACTTATAGTGAGTTGACCAGAGTGTGGCAAGAAGTATTGCATAATAAAGGGAAATTAAGTGAAAACAGTCTACATTGTTATCACACTCCAACTTACCGTCCTACAATACGAATCATCTTTCCCTGCAAGAAAACACAATAGGAGAACTGAACTTGAGAAATGaaaccattcagaattaatgtGATTAAAGAATGCTGTAATTACAATGGCACTAATTCCTGCTCTGTTATGACAGTTTAAGATGCCAGTCTTTCCCCATCTATTTTATCCTGATGCATTTAGAGGGACTTGAGGTTTACTATCCCTTTCTCATACACACCTCCTTTTGCCTCTCCTTCAGCTGCGTTTAGGTCAGCCCCTGGTGCAGTGCTGCCATCCATTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGTCATCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGCCATCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGCCACCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGCCATCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGCCATCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGCCACCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCAGCCATCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCTGCCATCCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCTGCCATCCGTTTTAGACTTATCCTCGCCCACTGGTGCTGCGCAGCCATCCGGTTTAGACTCATCCTCGCCCACTGGTGCAGTGCAGCCATCCGTTTTAGACTCATCCTCGTCCACTGGTGCAGTGCAGCCATTCGTTTTAGACTCATCCTCGCCCACTGGTGCAGCGCTGCCATCTGTTTTAGACTCGGCCACTGAGGAAACAAACAGAGAGGGTAAACCATGTTctacagcctctctactgaacCACCAGTGTTTCCCAGACAGTGTTTGTTTAGACAGGACTAGCCCTCCCACCACAATGTTTTTCAAACCCGACTTGTTCTAACAATCCTCAACATATTTGATGGTAGAATTCCAGTGTAACGCCACTTTCACCTCCATCTGTAACCAGGTGTct

Function

NR:

description
uncharacterized protein LOC110527331 isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU657079 True 2545 lncRNA 0.42 2 13333522 13336095

Neighbor

gene id symbol gene type direction distance location
LOC100136183 LOC100380633 coding upstream 184046 13135560 ~ 13149476 (+)
LOC100136184 LOC100136184 coding upstream 202605 13117153 ~ 13130917 (+)
LOC110527329 LOC106574721 coding upstream 243171 13075980 ~ 13090351 (+)
LOC110527327 LOC106575575 coding upstream 274696 13055457 ~ 13058826 (+)
LOC110527322 LOC106574731 coding upstream 421201 12900599 ~ 12912321 (+)
LOC110527332 LOC106575562 coding downstream 31534 13367629 ~ 13371986 (+)
LOC110527334 LOC106575514 coding downstream 35642 13371737 ~ 13421278 (+)
LOC110527335 LOC106575499 coding downstream 94428 13430523 ~ 13443490 (+)
LOC110527337 tgds coding downstream 115746 13451841 ~ 13460114 (+)
LOC110528759 LOC106575503 coding downstream 184178 13520273 ~ 13523716 (+)
G576188 NA non-coding upstream 105340 13224462 ~ 13228182 (+)
G576173 NA non-coding upstream 121295 13190997 ~ 13212227 (+)
G576109 NA non-coding upstream 280338 13052860 ~ 13053184 (+)
G576107 NA non-coding upstream 283363 13049941 ~ 13050159 (+)
G576106 NA non-coding upstream 285717 13047581 ~ 13047805 (+)
G576292 NA non-coding downstream 107678 13443773 ~ 13447070 (+)
G576238 NA non-coding downstream 124455 13460550 ~ 13461432 (+)
G576315 NA non-coding downstream 147129 13483224 ~ 13484753 (+)
G576707 NA non-coding downstream 180313 13516408 ~ 13516616 (+)
G576708 NA non-coding downstream 180593 13516688 ~ 13517159 (+)
G576161 NA other upstream 126033 13173312 ~ 13207489 (+)
G576160 NA other upstream 160448 13172784 ~ 13173074 (+)
G575758 NA other upstream 791041 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 864771 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1498207 11826502 ~ 11836170 (+)
G576241 LOC106575516 other downstream 150421 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 779241 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 809975 14146070 ~ 14159585 (+)
G577261 NA other downstream 836428 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 894622 14218353 ~ 14230983 (+)

Expression


Co-expression Network