G576292


Basic Information

Item Value
gene id G576292
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13443773 ~ 13447070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU657241
GCTGCCAGCTACTCTACTCTCTACCTGACCTAGATATAGAATACATAGAAACCCCCTTATCTAAAGGAACACTATTAAAAGAAGTCCCCTCTGTAATGGAATAGTACTGCCTGAATTGGTACTACTTTCTGTGGTAGAGTCAAAAAAGGTGCAAATGAATGTTACAGTATTAGCCCAAGCACGTTCCTGTTGTCAGACTATTTGCATAATACAAGAAAGGGAGTTAGTTAGTGGTGGTATTGCAGGAAAATAAGTCCTATGTGTATTCATCCCCCTCAGCCCACAGTGTCCTGGTGGGCCTGAGGTCAGAAATAGCCCAGTGGGTAACCAGTGTCCTGAAAAGACCCAAGATGGACGCCATGGTCTGGTCTGTAGGGAGCCACTGATGTGTGTAAACCAGCACAGGAGCACCTGGTTAAACAGCAGTATGGGACCGGTGTGGGAGTGAGCACTACTTTGCTCCTGGCCTAGTCCTCATTGTCACTAATAGCCCACCATTCTCAAATAGTTTTAATTCATATAAGGTTCAGTGCCAtataggctgtgtttATGTTATGTTCTTGATCTTTTGCAACATGGAGGTAAAATGAGTGAAAGAAGAGCATACAGAAAACAAGGATTATAACCAGCTAACTAACAGTGACTCTGAAACCACCAAACCAGAAAACAGGCCAACAGGCAGGTAGTGGAGAAACATCAGTAACACGACTCTTCCCCTTTTCATTGTTTAGAAGTCTGGGGTTAGTTTAACCACATTCCACAACATGTTTCCACAACTTTGACTGTGTtgtgtaggctactatttatATTGGCCTATTTAGTGTCACATACTGGAATCCATAGCAGCCGGACCGAAAACAATGACCAACCAAAGATGATTATCTATCTGCAAGCAACTACCCAAATAAAGTGAGACTGACTTGGCTTAGCTCTGATGTTAGTGTTTGATATTAGCCTCTCAGATCCGTTTGAGGAAGTGGAGAGCCGTAAAACTGTTTGTGTACTCAAGGTGGAGCGTGGAGGTGGACATTTCGTGGTTTGTCCTTCAATGTTTGAATTATCCAGAATTATCATGCGTTTAGTTGTTGAATGTGAATGCAGGCAGTTTGAGCAAAGACACTGGTCACTTCTATGGTTTGAGTGTGCATTGGTTGAGAGTAGTCTACAGCAGTGTCTTTGCTAAAAAAAATAGACTGTTTCGTTGTTGCCCttgacaaacacacctcattcaactcattgagggcttgatgattagttgacaagttgaatcaggtgtgcttgtccagggttacaatacaAATGTTCAccgttggggatactggaggaccagggttgagaaACGCTGGTCAACATAAGCTACTGTAACAGATCAAGAGAACTGCTGCCCCCTGCAGACATTTTCTTGTATTGCATTAACATTGATAAAGACTTATTTTACAAAAGTATACAGTAATGAATTTAAACAGTGTTATAAACATGCTTAATAGGAACATTACACAGTCACTGCTCTGTTGACCATTTTCCCCTCAATATCTCCGCATAACTTAACTATCAGACTGGTCATGTATGTCAATGTGAAACCCATCTTTTCATAGACAAACACAGGTACCTTCTCTACTAGCAAAGTGATTGTCTTCTCAGGCACTTACGACGATTGAGAAAGAAAATAAAGCTACATTTAAACATTGCACATGTCTAGCTCCAATGTCAGACAAAACAATACCAAGCGTTCATATTCAAGTATAATTCGATAAGTACACAACTAAAAATTATAATACGATTCTCACACATGCAACTAGCTGCAGTGTTGGAGTGCTGGGGATGACACAAAGATTCCATGAGTTCCATGTGATTTCTGTAATAGCCTCAGCACACCCTAAACCTGAAGCTCGCAGAAAGAACGATCAATTGACGACAATAGAATGAAACGGCAGTAAAACAGTGTGAAGTTAAGATCAGACTAAATTATTGGTTTGAGAtttaccacactgaacatggatcCATATCTCTATGGATCAACGGTATTTCAGTCCGCGCCTGGATATCTTTATCGGCAATGAATTTGACAATCGGTAACCTTTCGTTGTAATCTATTATAAACCTATTAAACATTTTGGGAGTCTTATACTCCGTCAGAAAATGAAAAAGAGACATCAAATCCAGCCCAAGTTTGACATTCAAAATAAAACGGTGAACCACAAGTTCACACATACATACTACAAATAAGactaacatacaggtaactgccaaaataaagaaaacaccaacataaagagTCTTAATAAGGAGTTGTGCCACGaggcagaacagcttcaatgcaccttggcataaattctggaactctattggagggatgcgacatcattcttccacgagaaattccatcatttgatgttttgttggtggtggtggaaaacactgtccccggttgagatctggtgactgagacggccatatGGTTTACATAGTTTTCatactcatcaaaccattcagtgaccacccGTGCCCTGTGAATGGGGGCATTGTAATCCTGTAGGGCCACAGCCATGGCAGACAGCATTTTTATAcgtgaccctaagcatgatgggatgtgaTTTGCTTAACCCAGgagccacacctgtgtggaagcacctgcttttaaTATACTTTGGATCCCTCTTTTACTCAAgggtttccattattttggcagttacctgtgtcCACATCTGTGGTATACTAACAAATGAGTCTCATTTACATACATACTTTATGTGCGCTTAAACCCAGGTCTCACTCTCATCCTGTTTGGGAGGCTATTAAATAGGTGTGCTATCCAGCTACATGAGCAGGCCATCATTCCCCTTCTCTTCTATATTTGTGGGTGAACTTCCTACTTCTCTTCATCCCACCCTCCTCTTTCCTCACCCGTCTGTGGGGGAACCTTCGCCGTGAGTGAGCAGAGAGGAGTGGAAGTATTGTCCCTTTAACTGCAGGTGTCACAGTGTATCCCTTCGCCCTCGGCGTGTGTCACAGTGAAAGTGTTCCCCCTGCACGCGGGGTCAGTAGCGTCCCCGGCCCCCTCTGGACATGGTGAGGGGTagtgagacagaggagagagaagatactTCCCAGTATAAGCTACGAGACAGGAAAAGCTGGTAGAGGATCACCAC
>TU657242
GCTGCCAGCTACTCTACTCTCTACCTGACCTAGATATAGAATACATAGAAACCCCCTTATCTAAAGGAACACTATTAAAAGAAGTCCCCTCTGTAATGGAATAGTACTGCCTGAATTGGTACTACTTTCTGTGGTAGAGTCAAAAAAGGTGCAAATGAATGTTACAGTATTAGCCCAAGCACGTTCCTGTTGTCAGACTATTTGCATAATACAAGAAAGGGAGTTAGTTAGTGGTGGTATTGCAGGAAAATAAGTCCTATGTGTATTCATCCCCCTCAGCCCACAGTGTCCTGGTGGGCCTGAGGTCAGAAATAGCCCAGTGGGTAACCAGTGTCCTGAAAAGACCCAAGATGGACGCCATGGTCTGGTCTGTAGGGAGCCACTGATGTGTGTAAACCAGCACAGGAGCACCTGGTTAAACAGCAGTATGGGACCGGTGTGGGAGTGAGCACTACTTTGCTCCTGGCCTAGTCCTCATTGTCACTAATAGCCCACCATTCTCAAATAGTTTTAATTCATATAAGGTTCAGTGCCAtataggctgtTTCATGTTATGTTCTTGATCTTTTGCAACATGGAGGTAAAATGAGTGAAAGAAGAGCATACAGAAAACAAGGATTATAACCAGCTAACTAACAGTGACTCTGAAACCACCAAACCAGAAAACAGGCCAACAGGCAGGTAGTGGAGAAACATCAGTAACACGACTCTTCCCCTTTTCATTGTTTAGAAGTCTGGGGTTAGTTTAACCACATTCCACAACATGTTTCCACAACTTTGACTGTGTtgtgtaggctactatttatATTGGCCTATTTAGTGTCACATACTGGAATCCATAGCAGCCGGACCGAAAACAATGACCAACCAAAGATGATTATCTATCTGCAAGCAACTACCCAAATAAAGTGAGACTGACTTGGCTTAGCTCTGATGTTAGTGTTTGATATTAGCCTCTCAGATCCGTTTGAGGAAGTGGAGAGCCGTAAAACTGTTTGTGTACTCAAGGTGGAGCGTGGAGGTGGACATTTCGTGGTTTGTCCTTCAATGTTTGAATTATCCAGAATTATCATGCGTTTAGTTGTTGAATGTGAATGCAGGCAGTTTGAGCAAAGACACTGGTCACTTCTATGGTTTGAGTGTGCATTGGTTGAGAGTAGTCTACAGCAGTGTCTTTGCTAAAAAAAATAGACTGTTTCGTTGTTGCCCttgacaaacacacctcattcaactcattgagggcttgatgattagttgacaagttgaatcaggtgtgcttgtccagggttacaatacaAATGTTCAccgttggggatactggaggaccagggttgagaaACGCTGGTCAACATAAGCTACTGTAACAGATCAAGAGAACTGCTGCCCCCTGCAGACATTTTCTTGTATTGCATTAACATTGATAAAGACTTATTTTACAAAAGTATACAGTAATGAATTTAAACAGTGTTATAAACATGCTTAATAGGAACATTACACAGTCACTGCTCTGTTGACCATTTTCCCCTCAATATCTCCGCATAACTTAACTATCAGACTGGTCATGTATGTCAATGTGAAACCCATCTTTTCATAGACAAACACAGGTACCTTCTCTACTAGCAAAGTGATTGTCTTCTCAGGCACTTACGACGATTGAGAAAGAAAATAAAGCTACATTTAAACATTGCACATGTCTAGCTCCAATGTCAGACAAAACAATACCAAGCGTTCATATTCAAGTATAATTCGATAAGTACACAACTAAAAATTATAATACGATTCTCACACATGCAACTAGCTGCAGTGTTGGAGTGCTGGGGATGACACAAAGATTCCATGAGTTCCATGTGATTTCTGTAATAGCCTCAGCACACCCTAAACCTGAAGCTCGCAGAAAGAACGATCAATTGACGACAATAGAATGAAACGGCAGTAAAACAGTGTGAAGTTAAGATCAGACTAAATTATTGGTTTGAGAtttaccacactgaacatggatcCATATCTCTATGGATCAACGGTATTTCAGTCCGCGCCTGGATATCTTTATCGGCAATGAATTTGACAATCGGTAACCTTTCGTTGTAATCTATTATAAACCTATTAAACATTTTGGGAGTCTTATACTCCGTCAGAAAATGAAAAAGAGACATCAAATCCAGCCCAAGTTTGACATTCAAAATAAAACGGTGAACCACAAGTTCACACATACATACTACAAATAAGactaacatacaggtaactgccaaaataaagaaaacaccaacataaagagTCTTAATAAGGAGTTGTGCCACGaggcagaacagcttcaatgcaccttggcataaattctggaactctattggagggatgcgacatcattcttccacgagaaattccatcatttgatgttttgttggtggtggtggaaaacactgtccccggttgagatctggtgactgagacggccatatGGTTTACATAGTTTTCatactcatcaaaccattcagtgaccacccGTGCCCTGTGAATGGGGGCATTGTAATCCTGTAGGGCCACAGCCATGGCAGACAGCATTTTTATAcgtgaccctaagcatgatgggatgtgaTTTGCTTAACCCAGgagccacacctgtgtggaagcacctgcttttaaTATACTTTGGATCCCTCTTTTACTCAAgggtttccattattttggcagttacctgtgtcCACATCTGTGGTATACTAACAAATGAGTCTCATTTACATACATACTTTATGTGCGCTTAAACCCAGGTCTCACTCTCATCCTGTTTGGGAGGCTATTAAATAGGTGTGCTATCCAGCTACATGAGCAGGCCATCATTCCCCTTCTCTTCTATATTTGTGGGTGAACTTCCTACTTCTCTTCATCCCACCCTCCTCTTTCCTCACCCGTCTGTGGGGGAACCTTCGCCGTGAGTGAGCAGAGAGGAGTGGAAGTATTGTCCCTTTAACTGCAGGTGTCACAGTGTATCCCTTCGCCCTCGGCGTGTGTCACAGTGAAAGTGTTCCCCCTGCACGCGGGGTCAGTAGCGTCCCCGGCCCCCTCTGGACATGGTGAGGGGTagtgagacagaggagagagaagatactTCCCAGTATAAGCTACGAGACAGGAAAAGCTGGTAGAGGATCACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU657241 False 3152 lncRNA 0.43 2 13443773 13447070
TU657242 True 3151 lncRNA 0.43 2 13443773 13447070

Neighbor

gene id symbol gene type direction distance location
LOC110527335 LOC106575499 coding upstream 283 13430523 ~ 13443490 (+)
LOC110527334 LOC106575514 coding upstream 22495 13371737 ~ 13421278 (+)
LOC110527332 LOC106575562 coding upstream 71787 13367629 ~ 13371986 (+)
LOC100136183 LOC100380633 coding upstream 294297 13135560 ~ 13149476 (+)
LOC100136184 LOC100136184 coding upstream 312856 13117153 ~ 13130917 (+)
LOC110527337 tgds coding downstream 4771 13451841 ~ 13460114 (+)
LOC110528759 LOC106575503 coding downstream 73203 13520273 ~ 13523716 (+)
LOC110527094 NA coding downstream 77430 13524500 ~ 13527438 (+)
LOC110527340 LOC106575504 coding downstream 106025 13553095 ~ 13566497 (+)
ebpl ebpl coding downstream 122240 13569310 ~ 13573701 (+)
G576172 LOC106575469 non-coding upstream 85730 13200491 ~ 13358043 (+)
G576171 NA non-coding upstream 107678 13333522 ~ 13336095 (+)
G576188 NA non-coding upstream 215591 13224462 ~ 13228182 (+)
G576173 NA non-coding upstream 231546 13190997 ~ 13212227 (+)
G576109 NA non-coding upstream 390589 13052860 ~ 13053184 (+)
G576238 NA non-coding downstream 13480 13460550 ~ 13461432 (+)
G576315 NA non-coding downstream 36154 13483224 ~ 13484753 (+)
G576707 NA non-coding downstream 69338 13516408 ~ 13516616 (+)
G576708 NA non-coding downstream 69618 13516688 ~ 13517159 (+)
G576161 NA other upstream 236284 13173312 ~ 13207489 (+)
G576160 NA other upstream 270699 13172784 ~ 13173074 (+)
G575758 NA other upstream 901292 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 975022 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1608458 11826502 ~ 11836170 (+)
G576241 LOC106575516 other downstream 39446 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 668266 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 699000 14146070 ~ 14159585 (+)
G577261 NA other downstream 725453 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 783647 14218353 ~ 14230983 (+)

Expression


Co-expression Network