G576238


Basic Information

Item Value
gene id G576238
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13460550 ~ 13461432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU657169
ttggaagacaaatctctgtcccagtctcaggtcttttgcagactccatcaggttttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggtccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttaatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggcttcttcttgccactcttccataaaggccagatttgtgcaatatatgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagtttatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctcaacagtatctcagacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttgacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattgcacacaggtggattgtaattatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagta

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU657169 True 883 lncRNA 0.44 1 13460550 13461432

Neighbor

gene id symbol gene type direction distance location
LOC110527337 tgds coding upstream 436 13451841 ~ 13460114 (+)
LOC110527335 LOC106575499 coding upstream 17060 13430523 ~ 13443490 (+)
LOC110527334 LOC106575514 coding upstream 39272 13371737 ~ 13421278 (+)
LOC110527332 LOC106575562 coding upstream 88564 13367629 ~ 13371986 (+)
LOC100136183 LOC100380633 coding upstream 311074 13135560 ~ 13149476 (+)
LOC110528759 LOC106575503 coding downstream 58841 13520273 ~ 13523716 (+)
LOC110527094 NA coding downstream 63068 13524500 ~ 13527438 (+)
LOC110527340 LOC106575504 coding downstream 91663 13553095 ~ 13566497 (+)
ebpl ebpl coding downstream 107878 13569310 ~ 13573701 (+)
LOC110527343 LOC106575507 coding downstream 113417 13574849 ~ 13583653 (+)
G576292 NA non-coding upstream 13480 13443773 ~ 13447070 (+)
G576172 LOC106575469 non-coding upstream 102507 13200491 ~ 13358043 (+)
G576171 NA non-coding upstream 124455 13333522 ~ 13336095 (+)
G576188 NA non-coding upstream 232368 13224462 ~ 13228182 (+)
G576173 NA non-coding upstream 248323 13190997 ~ 13212227 (+)
G576315 NA non-coding downstream 21792 13483224 ~ 13484753 (+)
G576707 NA non-coding downstream 54976 13516408 ~ 13516616 (+)
G576708 NA non-coding downstream 55256 13516688 ~ 13517159 (+)
G576715 NA non-coding downstream 62559 13523991 ~ 13524206 (+)
G576161 NA other upstream 253061 13173312 ~ 13207489 (+)
G576160 NA other upstream 287476 13172784 ~ 13173074 (+)
G575758 NA other upstream 918069 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 991799 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1625235 11826502 ~ 11836170 (+)
G576241 LOC106575516 other downstream 25084 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 653904 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 684638 14146070 ~ 14159585 (+)
G577261 NA other downstream 711091 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 769285 14218353 ~ 14230983 (+)

Expression


Co-expression Network