XLOC_025162 (nfixb)


Basic Information

Item Value
gene id XLOC_025162
gene name nfixb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14768364 ~ 15058464 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049705
CGACTCGTTTGCTGTTCCTCTCCCACCACGCTCCTTTTTTTTTTCGGGGCaaacttttctgtttttttctaaaggaGTAAAATGGGTCTTTGAGACTGTTGGCAATATTCCCCGCTCCACAATGGCCACCGAACCGTTTCTGGTGAATGAAGACCCTTCCAGAGGTCCTGGGATACCAGAGTGCTTCGTCGTGTCTGATTCCTACAGGGATGAATTTCATCCCTTCATCGAGGCTTTGCTGCCACATGTCCGTGCGTTCTCCTACACCTGGTTCAACCTCCAGGCCCGTAAGCGCAAATACTTCAAAAAGCACGAGAAGCGCATGACGAAGGATGAGGAGCGCGCCGTCAAAGACGAACTCCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCGTCCCGTCTGCTCGCCAAGCTCCGCAAAGACATCCGCCCCGAGTTCCGCGAGGACTTTGTGCTCACCATCACGGGGAAGAAGCCGCCGTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGCCGCATCGACTGCCTGCGGCAAGCCGACAAGGTCTGGCGCCTGGACCTGGTGATGGTTATCCTGTTCAAGGGAAGCCCGCTGGAGAGCACGGATGGAGAGAGGCTGGTCAAGTCCCCGCAGTGCTCAAACCACGGCCTCTGCGTGCAGCCGCACCACATCGGAGTGTCCGTCAAGGAACTGGACCTGTATCTGGCCTACTTCGTCCACACGCCAGAATCTGGACAATCGGATAACTCCAACCAGCAAGGAGAAGCAGACATCAAGCCTCCGCCCAATGGGCACTTAAGTTTCCAGGACTGCTTCGTGACGTCAGGTGTGTGGAACGTGGCAGAGCTGGTCCGTGTGTCACAGACACCAGTTGCCACAGCGACCGGACCCAACTTCTCTCTGGCCGACCTTGACAGTCCAGGATACTACAACATTAACCTGGGTCGCCGCTCCATTACGTCCACGCCATCAACCAGCTCCAACAAGCGTAAATCTATTGATGACAGTGAGATGGAGAGCCCAGTGGACGATGTCTTCTACTCGGGTCGTTCTCCTGCCCCGGGAGCGTCTCAGCCCAGCGGCTGGCCCAATGACGTCGATGCAGTGCAACACCATTTGGCCAGTATGCAGGAGAGGAAGATAAAACACGAATCCGATGGCGTGCAGTTTCCTTACCATGcaGGAAGTCCCCGCGCCTCTGCTTCCTCCCTGCACTTCCCCTCACCCTCCCTCATCCAGCAGTCCAGCCCGTACTTCACCCATCCCACCATCCGATACCACCACCACCCGGGACAGGACCCGCTCAAGGAGTTTGTGCAGTTTGTGTGCGCCGATGGATCTGGACAGGCTAGCGGTCAGcatACTCCACGCCAGGCTCCACAGCTCCCAACAGGTTTGTCAGCATCGGATCACGGGACAACAACTTTCTGAACATCCCCCAGCAGACGCAGtcatgGTTCCTTTGACGAGGTCCTGCCTGCAACCTGTCGACACAATTTGAAAGTTTtcttttttgacaaaaaaaaaatcctgtttgaAAATTCCCTCCCACCCGAAACGCACCCTACGAGACGTGAGCAGAATATGATTGGGAAACGTTCGAGCATGTATTTGCCAACCGTCAGACGCCCTTCAAACCCACATGAGCAGCTCCGCTAAAGACTGTCAGATCACCGGCGGAGGAAACAGACGGACTGACACACACAAACTACAGTATCTGATCTACAGAGACACTAAATCATACTAGCAACAAGGATGTAGTGTACAATGGCCGGGATTTTCAACAGTTTCAGTGGTGAGGATTCAGACACAACAAACATGCAAGATTTGTACTCGATCCCTTATATTTTGTTTGTAATCAAAACACTTAAACGTGCTGACATTCAGCAAACAGGCGACACTAAAATTCACTAGACGTTTCACATTTATAGCGGGTGAAACGTCTGTTTAATGTTCCCTtcttcagtcaattcataaactaACTACGAAAAGCAGGAGTATTGCACTACAAATATGAGAAGAACACTAGATTGACGTGCACTATTGATCGACGGCGGACATTATTTGCACATTAGATTGCGGAGAAAAATGAACACACGCTACAAACTACCCAGAGATGCTTCTGAAAGGACGTCCTCATTTTTAGGCCTTGAACAAAAATGTTTTGTCATTTCAGGCCCTTAGCCAACTAGATTTTTTTAGCACTCCTGTAGGACAGACAACGCACACATTTAAGGCACATTTGTGAGATTTTGTGGCTGTTAAAGGACCTCTGTTTGCTGGTAATAGTGCAGTGATACACTAAATCAACCAAATTCACTGAGCAACAGTCAGTTTGTGTTACTTTGAATGggatatatgcacagctagtgttaaTCATCTAATGATAAACTTCTCGTGAAAGTCTAATGTGACttttcataaggtttcttttacagcatcgatgttgtaatgtaattaaaatacactcAGTTAAATAGACTGAAGCATTGATTTAGTCAAGCGTAAAACGATTTAAAAGATTGTCAGGAGCAGCTGGCGAGTGCaaaaactctattgaaaatactggggtaaaataaatgacatggcagggggaaatggattttaatgcagtgcttcttgtatggtttaagacccactttatatcgtacaGCAATCAGGCAGTAAAAAAAcactcatttttaaagaaatcagaccttaaacgtgacgattttataatggaaagactgttcaccggaagcgctgagGCTGGCTGCCTGAAATGAaatgtctgtgtgcatataccccttTGATGTGAACTCTACTGAAGGTTTTGCTCAAACTGGATTCTATTAAAACAGAAACGATTTCACTCACT
>TCONS_00049706
CGACTCGTTTGCTGTTCCTCTCCCACCACGCTCCTTTTTTTTTTCGGGGCaaacttttctgtttttttctaaaggaGTAAAATGGGTCTTTGAGACTGTTGGCAATATTCCCCGCTCCACAATGGCCACCGAACCGTTTCTGGTGAATGAAGACCCTTCCAGAGGTCCTGGGATACCAGAGTGCTTCGTCGTGTCTGATTCCTACAGGGTCCAACAGGATGAATTTCATCCCTTCATCGAGGCTTTGCTGCCACATGTCCGTGCGTTCTCCTACACCTGGTTCAACCTCCAGGCCCGTAAGCGCAAATACTTCAAAAAGCACGAGAAGCGCATGACGAAGGATGAGGAGCGCGCCGTCAAAGACGAACTCCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCGTCCCGTCTGCTCGCCAAGCTCCGCAAAGACATCCGCCCCGAGTTCCGCGAGGACTTTGTGCTCACCATCACGGGGAAGAAGCCGCCGTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGCCGCATCGACTGCCTGCGGCAAGCCGACAAGGTCTGGCGCCTGGACCTGGTGATGGTTATCCTGTTCAAGGGAAGCCCGCTGGAGAGCACGGATGGAGAGAGGCTGGTCAAGTCCCCGCAGTGCTCAAACCACGGCCTCTGCGTGCAGCCGCACCACATCGGAGTGTCCGTCAAGGAACTGGACCTGTATCTGGCCTACTTCGTCCACACGCCAGCAGAATCTGGACAATCGGATAACTCCAACCAGCAAGGAGAAGCAGACATCAAGCCTCCGCCCAATGGGCACTTAAGTTTCCAGGACTGCTTCGTGACGTCAGGTGTGTGGAACGTGGCAGAGCTGGTCCGTGTGTCACAGACACCAGTTGCCACAGCGACCGGACCCAACTTCTCTCTGGCCGACCTTGACAGTCCAGGATACTACAACATTAACCTGGGTCGCCGCTCCATTACGTCCACGCCATCAACCAGCTCCAACAAGCGTAAATCTATTGATGACAGTGAGATGGAGAGCCCAGTGGACGATGTCTTCTACTCGGGTCGTTCTCCTGCCCCGGGAGCGTCTCAGCCCAGCGGCTGGCCCAATGACGTCGATGCAGTGCAACACCATTTGGCCAGTATGCAGGAGAGGAAGATAAAACACGAATCCGATGGCGTGCAGTTTCCTTACCATGcaGGAAGTCCCCGCGCCTCTGCTTCCTCCCTGCACTTCCCCTCACCCTCCCTCATCCAGCAGTCCAGCCCGTACTTCACCCATCCCACCATCCGATACCACCACCACCCGGGACAGGACCCGCTCAAGGAGTTTGTGCAGTTTGTGTGCGCCGATGGATCTGGACAGGCTAGCGGTCAGcatACTCCACGCCAGGCTCCACAGCTCCCAACAGGTTTGTCAGCATCGGATCACGGGACAACAACTTTCTGAACATCCCCCAGCAGACGCAGtcatgGTTCCTTTGACGAGGTCCTGCCTGCAACCTGTCGACACAATTTGAAAGTTTtcttttttgacaaaaaaaaaatcctgtttgaAAATTCCCTCCCACCCGAAACGCACCCTACGAGACGTGAGCAGAATATGATTGGGAAACGTTCGAGCATGTATTTGCCAACCGTCAGACGCCCTTCAAACCCACATGAGCAGCTCCGCTAAAGACTGTCAGATCACCGGCGGAGGAAACAGACGGACTGACACACACAAACTACAGTATCTGATCTACAGAGACACTAAATCATACTAGCAACAAGGATGTAGTGTACAATGGCCGGGATTTTCAACAGTTTCAGTGGTGAGGATTCAGACACAACAAACATGCAAGATTTGTACTCGATCCCTTATATTTTGTTTGTAATCAAAACACTTAAACGTGCTGACATTCAGCAAACAGGCGACACTAAAATTCACTAGACGTTTCACATTTATAGCGGGTGAAACGTCTGTTTAATGTTCCCTtcttcagtcaattcataaactaACTACGAAAAGCAGGAGTATTGCACTACAAATATGAGAAGAACACTAGATTGACGTGCACTATTGATCGACGGCGGACATTATTTGCACATTAGATTGCGGAGAAAAATGAACACACGCTACAAACTACCCAGAGATGCTTCTGAAAGGACGTCCTCATTTTTAGGCCTTGAACAAAAATGTTTTGTCATTTCAGGCCCTTAGCCAACTAGATTTTTTTAGCACTCCTGTAGGACAGACAACGCACACATTTAAGGCACATTTGTGAGATTTTGTGGCTGTTAAAGGACCTCTGTTTGCTGGTAATAGTGCAGTGATACACTAAATCAACCAAATTCACTGAGCAACAGTCAGTTTGTGTTACTTTGAATGggatatatgcacagctagtgttaaTCATCTAATGATAAACTTCTCGTGAAAGTCTAATGTGACttttcataaggtttcttttacagcatcgatgttgtaatgtaattaaaatacactcAGTTAAATAGACTGAAGCATTGATTTAGTCAAGCGTAAAACGATTTAAAAGATTGTCAGGAGCAGCTGGCGAGTGCaaaaactctattgaaaatactggggtaaaataaatgacatggcagggggaaatggattttaatgcagtgcttcttgtatggtttaagacccactttatatcgtacaGCAATCAGGCAGTAAAAAAAcactcatttttaaagaaatcagaccttaaacgtgacgattttataatggaaagactgttcaccggaagcgctgagGCTGGCTGCCTGAAATGAaatgtctgtgtgcatataccccttTGATGTGAACTCTACTGAAGGTTTTGCTCAAACTGGATTCTATTAAAACAGAAACGATTTCACTCACTA

Function

symbol description
nfixb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in midbrain; muscle; and telencephalon. Human ortholog(s) of this gene implicated in Marshall-Smith syndrome and Sotos syndrome 2. Orthologous to human NFIX (nuclear factor I X).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-5000 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in midbrain; muscle; and telencephalon. Human ortholog(s) of this gene implicated in Marshall-Smith syndrome and Sotos syndrome 2. Orthologous to human NFIX (nuclear factor I X).

Ensembl:

ensembl_id ENSDARG00000061836

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049705 False 2870 mRNA 0.48 11 14768364 15058463
TCONS_00049706 True 2883 mRNA 0.48 11 14768364 15058464

Neighbor

gene id symbol gene type direction distance location
XLOC_025161 zgc:158403 coding upstream 80254 14641962 ~ 14688110 (+)
XLOC_025160 tspan35 coding upstream 129965 14611299 ~ 14638399 (+)
XLOC_025159 znf653 coding upstream 162246 14571813 ~ 14606118 (+)
XLOC_025158 epor coding upstream 207268 14543953 ~ 14561096 (+)
XLOC_025157 rab3db coding upstream 230788 14512670 ~ 14537576 (+)
XLOC_025163 tspan10 coding downstream 118273 15176737 ~ 15186292 (+)
XLOC_025164 NA coding downstream 171488 15229952 ~ 15231838 (+)
XLOC_025165 asphd1 coding downstream 213479 15271943 ~ 15284693 (+)
XLOC_025166 cabp5b coding downstream 238360 15296824 ~ 15317392 (+)
XLOC_025167 sh2b1 coding downstream 299995 15358459 ~ 15392466 (+)
XLOC_025429 BX649540.1 misc downstream 15190275 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 368712 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 480523 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 513599 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 519826 14242119 ~ 14248538 (+)
XLOC_025147 NA non-coding upstream 565845 14201043 ~ 14202519 (+)
XLOC_025169 NA non-coding downstream 446720 15505184 ~ 15506157 (+)
XLOC_025170 NA non-coding downstream 459088 15517552 ~ 15517899 (+)
XLOC_025172 NA non-coding downstream 559814 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 580988 15639452 ~ 15646667 (+)

Expression


Co-expression Network