G576756 (LOC106575511)


Basic Information

Item Value
gene id G576756
gene name LOC106575511
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13617588 ~ 13621304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU657818
TGACAGAGTACACTGTAAATCCTCAAACAGAACCACAAGAACCAGATTAGAACCCAAAGAACATGATTGAATAACCAAGAAGAACAGACGTGGAGTCCTAGCATCCAGTGAGACCTAGATCAGTGCATTGTGATCcgtcagaaacacagacacacagcaaccAACACGACAACACatgctacagagagagacacacagtttGCCTTACAGTAAACAAACGACCCAAATCAGTATTTTCCGGCTGTGAATATCACACAGATATTCAACAGCAAATCTCAGAGAGAAGATTTGTCTGTGATTGTGGAACAAGCCAGTGATTTGTGACTATGTGTTGGGGGGGGGACATTCTGTATGTGGAAGAAGAAGAGCAGGATCCAGGCCAACCACATAGTGCAGCAGCGTGTTCCTCCCAGACATGTTGTCACACTACCTCTCCTTTTGGCCTGTAAGAGACTAGAGGTGCTGAGCCACTTGGCCCTGCTCAGAGTGATGTGAGGAGTCTGACCAGGCTCTGAGGAGAAGAAGCAGTAGCAGTCAGCAACGTCGTCCAGATGAACGCTGTGTCTGACACTCAGGTGGCTTTGAAGTACACAGGTGTAGGTTGACTCATCCATCAAACTGTCTTACAAAGGCCTTTGAGGCCAACAAGGCATGTCATAGATTTTTCACTTGTTTAAATCAAGACATTGTTGTATGCATCTTCTGTGTCAACGATCGTCAGATTTGAATGATCTTATCTGGGTCATCTCCATGTTGCAGTCCCTCGTCAGTCCAGTGTCTTTAGCTAGACAGTACCAATGCACTCAGCGGGCCCCGGTGGCTGAATGTCTTACATTGATCTACCACAATTCATTCCCTCTCCAGTTTACTCTGCTTGCATGATGGTCACACATAGATATATTTTGGGATGATGGGGAGTTGACATGGTGCTGAGATGACTACAGTGAGGGAGGgtcaggatggatggatgactacagggagggagggtcagGGTGGCTGGATGACTACAGTGACGGAGGGTCAGGGTGGCTGGATGACTACAGTGACGGAGGGTCAGGGTGGCTGGATGACTACAGTGAGGGAGGGTCAGGGTGGCTGGATGACTACAGTGACGGAGGCTCAGGATGGATGACTACAGTGACGGAGGCTCAGGATGGACGACTACTGTGAGGCAGGGTCAGGATGGCTGGATGACtacagtgagggagggagggtcaggATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGACGGAGGGTCAGGGTGGCTGGATGACTACAGTGACAGAGGCTCAGGATGGCTGGATGACTACAGTGACAGAGGCTCAGGATGGATGACTACAGTGAGGCAGGGTTAGGATGGATGACTACAGTGAGGCAGGGTCAGGAGCGCTGGATGACTACAGCGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGGAGGGTCAGGATGGCTGGATGACTACAGTGAGGGAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGATCAGGATGGCTGGATGACTACAGTGAGGCAGGgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACAGTGACGGAGGCTCAGGATGGATGACTACAGTGACGGAGGgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATAACTACAGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGAgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGGgtcaggatggatggatgactaCTGTGAGGGAGGGTCAGGATGGATGACTACACTACAGAGTCAAACACAGGTATGACATGGACTAGATAGAATACCTTTACACCCAAAGGGAGTTGGGTCACTCTTAATCTCGTGGCTTTTGGCCTTATGGTCAGGGCTAAGGAGGGATCCTTTCTGACTCTTCAGATTGCTGAAGCCTTGAAGGGTAAAACGCTTTTTAGCCACTGATGACCTGTCAGTGGTGGGACTGGTGACTGTCTCCTCTTTGTGTTTTGGGGAGGAGGGGGAATTGGGGTCAGAGTTGACACCAtctgtcttcttctcttctcccttcttCACGCTCTTCTGACAGTTCCTAAATGGACTAAGAGGGAGAAACAAACAGGTGAAAAAGAGAAGAACCAACCATGTTGATTCCTTCTCTGTAACTGGCTCTAGCCATGGTTCTCTCTGTAAAATCTGACCTGAGACAGATAGGTGGGCTGTTGCTGGTTGGACTGGGAGACATTGTGTCTGACACCTTCTTTTGACTAGATTCTGGAACAAATCATCACAGTTactaacagaacacagacacaacaacagagAATTTAGCATCCAGATGTGTATCAACTCtggaatgtgtgtgcgtgtgtctgtaatGCCGCAGATCCCCTATCTTACCCCTGCAGGCCTTCAGCTGGCCAGTCAGAACCTTCCTGATCTCATTCAACCAAGATGTTTTGATCTCAGGTGTCGCAGCCTGGACGATAAACACCTCCTCTCTGGAATTACACCAGATCTCAAACTTCTTGTTGTCACCCTTGGCGCTCTCCGTGATGCCCACCGCACTCATCTGTTAGA

Function

NR:

description
guanine nucleotide exchange factor DBS-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU657818 True 2990 lncRNA 0.51 3 13617588 13621304

Neighbor

gene id symbol gene type direction distance location
cdadc1 LOC106575509 coding upstream 22830 13584213 ~ 13594758 (+)
LOC110527343 LOC106575507 coding upstream 33935 13574849 ~ 13583653 (+)
ebpl ebpl coding upstream 43887 13569310 ~ 13573701 (+)
LOC110527340 LOC106575504 coding upstream 51091 13553095 ~ 13566497 (+)
LOC110527094 NA coding upstream 90150 13524500 ~ 13527438 (+)
LOC110527351 LOC106575518 coding downstream 93347 13714651 ~ 13806043 (+)
tsga10 LOC106574631 coding downstream 510137 14131441 ~ 14143542 (+)
LOC110527359 LOC106574634 coding downstream 524907 14146070 ~ 14159585 (+)
LOC110527360 LOC106574621 coding downstream 540595 14161899 ~ 14166522 (+)
LOC118965342 NA coding downstream 597049 14218353 ~ 14230983 (+)
G576750 NA non-coding upstream 7823 13607504 ~ 13609765 (+)
G576727 NA non-coding upstream 84520 13532681 ~ 13533068 (+)
G576715 NA non-coding upstream 93382 13523991 ~ 13524206 (+)
LOC110528759 LOC106575503 non-coding upstream 96208 13520273 ~ 13523716 (+)
G576708 NA non-coding upstream 100429 13516688 ~ 13517159 (+)
G576767 NA non-coding downstream 9773 13631077 ~ 13631503 (+)
G576770 NA non-coding downstream 11564 13632868 ~ 13633486 (+)
G576791 NA non-coding downstream 63189 13684493 ~ 13686471 (+)
G576930 NA non-coding downstream 112198 13733502 ~ 13733702 (+)
G576932 NA non-coding downstream 113566 13734870 ~ 13735111 (+)
G576241 LOC106575516 other upstream 127851 13486516 ~ 13489737 (+)
G576161 NA other upstream 410099 13173312 ~ 13207489 (+)
G576160 NA other upstream 444514 13172784 ~ 13173074 (+)
G575758 NA other upstream 1075107 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 1148837 12400616 ~ 12474139 (+)
G577180 LOC106574637 other downstream 494032 14115016 ~ 14116345 (+)
G577261 NA other downstream 551219 14172523 ~ 14180064 (+)
G577561 NA other downstream 784792 14406096 ~ 14406598 (+)

Expression


Co-expression Network