XLOC_025163 (tspan10)


Basic Information

Item Value
gene id XLOC_025163
gene name tspan10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15176737 ~ 15186292 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049707
gcccaaagtgtgccaagaaaaaatccccTCCACTTATTACACCACcatcagcagcctgaaccatGGATACAAGGCAGGAGGGATCCATCCTTtcttgttgttgatgccaaatgttgaccctaccatccgaatgtcgcagcagaaatcgagactcatcagaccaggcaacattttccaatattctattgaccagttttggtgagcctgtgctaaatgtagtctcagtttcctgttcttagctgacacgagtggcacccggtgtggttttctgctgctgtagcttatcagccacaaggttggacgtgttgtgcattcagagatgagcttctgcatacctcggttgtaacgagtgcttatttaagttactgttgcctttctatcagcttaaaccagtctcctctgatattttctctttttcgatcgtcttgaccatgtcagtTACTGctatctgattggctaattagaaatttgcattaaccagcagttggacaggtgtacctaataaagtggccggtgagtgtatatttttatgtttgtaaaatCCAAATATGTCATTTTTATGTATCAGATTTCAATATGGGTGCAAATAATTACTAACGAACAGATCTCTTCTTCACAGTGCAGCTTCATGCTAACGCAGTGTTTAGTGTTTCTGTGAGCCTGCAGGACACCATGAACTCTGACCTTGTAATCCTCAGTACTGTGACTCTCACATGATGCTGGAAACAGCAGCGCAACGGCCCCCTCACACAGCAGACCAGagacacacgcatacacacatctGTCCTGGGAACAGAAAGCGTCCGCTCCCGCTGTTTGGGAGGAATGGGGTGGTTTCCGTCTTTTGGGAGATTTCTCTTTTTCTGGGAGAGGAGGAATCAGAATGGAGAGAACAAGCCCCTTATTACAAAGGACGTCAGGAAATCAGAAGGAGCCTCCGCTGCCTCATACTTGGGAACATACGAAAGTTCAGGAAGTCACACCAGCTCCAGTTTCTCCAGCCATGAAGAACCCTCCAGATCTTCATCACGGAGGTTCCGATTCAGTCCAGCGTCTCTCGGAACGTCCGGCTGGAGCGACTACATCCTCAAATACCTGCTGATCTCCAGTAACCTGCTCTTCACAGCCCTGGGCCTGGCCACGTTGGTGCTGGGTCTCTGGGGTCTGATTAACAAAGAGTCCTTCGCTCAGGAGAAGATCAGCGGGATTGGGACAGACCCCATGCTGCTCTTCTTGTTCCTGGGTTTGGTCCTCGCCCTGCTGAGCATGACGGGATGCATCGGGGCGTTGCGAGAGAACATGTGTCTCCTACGGATCTTCTCGGCTGCGGTTTTTCTTCTGGTGGTGGCACAGGTCCTGGCAGCGGTTGCACTGTTTAGCATGCAGGCTCAGATGGAGGACTACCTACGTTTGGGCATGTTGACCGCTATCGTGAGGTATCAGGATGACCTGGACCTAAGATTTATCACTGATGAGATCCAGACCAGCCTGCAGTGCTGCGGGGCCGACACCTACAGAGACTGGGAGATCAATGTGTATTTCAACTGTTCCGCTCCAGGGGTGCAGGCTTGTGGAGTGCCCCCATCCTGCTGCATCGACCCGCTGGAGAACGGGACGGTGTGGAACAGCCAGTGTGGAGTGGGCGCCCAGCAGCTGGACGAGTTCTCTGCCCAGAGCGTGATCTTCCTGGGTGGCTGTTTAGGTAGCGTCGCCCGCTGGATGGAGCACAACGGCGGGGTGATCGTCACAGTGGTCATCGTCTTGCTGGGCATCCAGATACTCACTCTGTTCATAACAGCTCGTCTGCTGCACAAGATAAGGTGGACCAGAGCTCAGCACCAGGCGTACTTACAGGCACTGCAATAA

Function

symbol description
tspan10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TSPAN10 (tetraspanin 10).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-201 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TSPAN10 (tetraspanin 10).

Ensembl:

ensembl_id ENSDARG00000044767

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049707 True 1866 mRNA 0.51 3 15176737 15186292

Neighbor

gene id symbol gene type direction distance location
XLOC_025162 nfixb coding upstream 118273 14768364 ~ 15058464 (+)
XLOC_025161 zgc:158403 coding upstream 488627 14641962 ~ 14688110 (+)
XLOC_025160 tspan35 coding upstream 538338 14611299 ~ 14638399 (+)
XLOC_025159 znf653 coding upstream 570619 14571813 ~ 14606118 (+)
XLOC_025158 epor coding upstream 615641 14543953 ~ 14561096 (+)
XLOC_025164 NA coding downstream 43660 15229952 ~ 15231838 (+)
XLOC_025165 asphd1 coding downstream 85651 15271943 ~ 15284693 (+)
XLOC_025166 cabp5b coding downstream 110532 15296824 ~ 15317392 (+)
XLOC_025167 sh2b1 coding downstream 172167 15358459 ~ 15392466 (+)
XLOC_025168 atxn2l coding downstream 208136 15394428 ~ 15425689 (+)
XLOC_025429 BX649540.1 misc downstream 15062447 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 777085 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 888896 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 921972 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 928199 14242119 ~ 14248538 (+)
XLOC_025147 NA non-coding upstream 974218 14201043 ~ 14202519 (+)
XLOC_025169 NA non-coding downstream 318892 15505184 ~ 15506157 (+)
XLOC_025170 NA non-coding downstream 331260 15517552 ~ 15517899 (+)
XLOC_025172 NA non-coding downstream 431986 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 453160 15639452 ~ 15646667 (+)

Expression


Co-expression Network