XLOC_025167 (sh2b1)


Basic Information

Item Value
gene id XLOC_025167
gene name sh2b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15358459 ~ 15392466 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049711
TCCCACTATATCGCGAGAGACTGGTTGGGACAGCAGGCAGAGAAATATTCATATACCTGCAACAAGAGCAGTCGCAAAGcccttataaataaatagatacgaTACGATTCATCAATAAGTTTAGCATCAACAGGGGACAGCTAGACGAAGAGGAATGAATATTATTGTAAACATTGGCAGACACACTGCCTGCCTAGCAATACAGCCAGCTAGCTGACCAGCAGCTCAAACTTGATAATTTAATAGCAGTGCTGTGTTATCTTGTTAGCACCAGGCTAGCTCAAAAATACGTTTGCACGGAAACCTTTTTGGATTTCACTAAGGCCAACGAACAAATCGCGTCATATGTGCACAAAAGCGAACAACTGCGCCGGCCTCGAGTTACACCGTGGCCTGAAAATGGTCACAAATCCCAAGCGTAGGATCCTCTCCGAACCGTAAACCAGAGACCACCTGAAAACTACCATCATCAGCTTAGCCTGCTGCTCCTGACATCTTTTAGTTTTGCTCCTACATACACACATTATTGTGTATAGAATGTGAAGTACTTTAGACGAATACAGAGCCAAGTCTTTTTCTTTAAATGGGGGAAGACGATTCCTGGCCATTTTTATCAGGCCACATATTTTTGGTCAGGTTTTCAGAATTGGAGTCTATCATAAAACCGTAGCCTGATGAACAGATTGCGTGCCCCCCATACACACCTAATCGCAGCCATCCTGACGTCTTTGATGATCGGTTGGTCTGAGATTGATTAGTCAGTCATGAACGGCTCCTTATTAACTCCACCGAGTCCACGGGCTGCGGCTAATTCATCTCCCCTTCCGCCATCCCCTTCTCCATCGCCCTCTCCTCCGTCTCCATCGCTGTTGCCCTTGTCCACCAGACCTCCGCCTTTGCCTCCTCCGACTCCTGTAGGTCAACCCTTGTCTTCGTTATCCGACACACCCACACCATCGCCATCTCCCTGCCTCAGCTGGACCGAGTTCTGTGAGCTCCATGCCCGGGTAGCCGCCGGGGATTTTGCTCGACATTTCCGGGCCTTCCTTCAGGAGAACCCAAATTACTCCCCTGATTCGGCAGCTCTTTTTTGCCGTCGCTTTACAGACAGATTTGTTCGGCATTTTGAGAGCGAGCTTGAAGTAACTGGTATCAGTAGGGAAGGTACGGTGAATTGGGTCGCCCAATCGGATGTTACCTCGTTAGAGGAGGATGCAGCATCTCCGTCTTTGCTAACGGCGGAATCCGCAGCAGCCTCATGCCCACCTATTCACACACGGGCCACTCCCAAACCTATCCTGACCCAGGAAAGCCGTGGTACAGAACGATTCCAGAACTCTGGAGGCTTTCAGGACTCGTACGCTCACGCGCAGATTCTCCCACCGTCCTCCTCGTCGTCTTGCTCGTCCTCTATGGGTGGAAATAACGGGCGCAGAGAGGAGAGGGGAATGGCCCTCAAACACAATCCTTCAGGATATAAAGACCTAGAGGAAGAGGAAGATAGCTGGGCAGGACCTGTAACTCTGGAGGAGGTAGAGACCGACATCATAGGTAGGGACAATGAGGGCGAGGATTTAGAAAGAGCCGACCTCACCCTCAATCCCTCCAGTGCACCAGCAAACTCGAAAGGCAACGGGACGCCTATTGGAGGTCACTCCAAGAACAAGTTAAAGAAGCGTTTCTCTTTGCGCAGTGTGGGACGGAGTGTCAGGGGTAGTGTGAGGGGCATCTTGCATTGGCGCAGCTCCTCCAGCGACTCCCCGCAGAACTGCAGCAACTCCAGCCCTCTTCCCTCCAGCTACAGCTACACTACTGGCCTGCAGGATGGCAAGAGGAACTCCGGCTCGCAAGGGGTTCCCTCTTCTCTCCCGGTGTCTCTCTCTCTTCCCCTTTCCCTTCCTCACTCCTCGTCCTCTTCACTGCCCCCTTCATCCTCCAGCAGCGCCACTTCTCTTTCGCTCTCTGAGGCCCGCGACTGGCGAAGGAGCAACGGAGATGGCGAGAAGGAGAAATGGAGTCACCGGTTGGAAAAACTACGACTGTCTCGCTCTCCTCCGCCAAATCTGTCCAGCGCAGCTCCTCCATCTTCGGTTTTATCCCCTTCATCGCTCCCACCAAGCAGCATCAACGCCTCCAGGAAGATGGGCAGGCTGGTGCGGGAGGGAGGAGTGACCGTGTGCTCATCTTCGGATGAGTTCGCCAGCACTCACGGGTTCCCAGGCTTTTCCTTTGGACTGCTGCATCACGGCGCAGACAGCTCTGTGTCTGGACATCCCACAGCCATAGGTGGCGCTGTGGGTGGACGGGGTACGCGTTGGCACAAGTGCCGTCTAGTTCTGAAAGAACGAGATAAGGATGGAGGGGATGGAGGGTTGGAATATTTCCTGGAGTTTTACATCCCGCCGAAGtcCTCCAAGCCCAGACTGACTGTCCCATGCTGCTCTATTGTTGACGTGAGGAGCACTACAGCCATTGAGGTGCCAGACAAGGAGAACACCTTCCTTCTACAGATGGAAGGTCAGGTGCAGTACGTGATTGAGACCAGAGATGCGGTTCAGATGAGAGCGTGGCTCAGCGACATCAGAAACGCTATCTGTTTGAGTGAGCAAGAGGATGTTGATGGGGTATGTGGGAGTGCTCTGACTGACCTCAGCGGTACGCCGGAATTCAGCGACCGCCTGTCTCAAGTGTGCTATGGTGGAGTTGGTGGTTCTCCACAGCTGGAGCCTCTACCTCCTGAATTACCGCCCCGCGCCCCTCTGGACGAATCAGATAGTCGGCTGCTTGGTGGGGGCGGAGCCAGTCTCGGCACACCTTTTGCTGAAACCCCTGATGCCACAGGGTCGTTCCTGTTCTCTGATGTGTCTGTGTCTGAGACGGTGGAGCATCCTCTGAGCGAGTGTCAGTGGTTTCACGGTACACTCTCGCGTCTTAAAGCGGCTCAGCTGGTGCTGGCGGGTGGCATGGCCAGTCATGGAGTATTTCTCGTGCGGCAGAGTGAGACACGGCGGGGGGAGTATGTGCTCACCTTCAACTTCCAGGGAAAAGCAAAGCACTTGCGCCTCTCTCTGAACGAGGATGGACAGTGTCGTGTGCAGCATCTCTGGTTCCAGTCTATTTTTGACATGCTGGAGCATTTCCGTGTGCACCCCATTCCCCTGGAGTCTGGGGGTGCCTCTGATGTCACCCTCATCAGCTTTGTGGGGGCTACAAATGTCCGGCAACCAGACTTGACCAGCAGACCCCGTAGTCCTCCCCAACCGCCGCCTCCACCCTTGCCTCCAGGACGCCCCCCGCCCCCAACCCCGCCCCAGGAGCGCGGACCCGAGCCTGAGGTGGCCGGCGGAGGCGGAGCGAGCAGCGGGGCGGAGGAGTGCGAGGAGCGAGAGCGGGAGCCAGCGCTTCTCCAACTGGAAGGGGTGGAGGGAGAAGAGCGCGAAGGAGGAAGAGCGAGAGCTATCGACAACCAGTACTCCTTCTTCTGAACCCAGAACCAGGACAGCCCTTCACAATCAGTATTTTCAGTATTCTCCAACTGACTGATTTAttattaacactattaaacaTGAGCTTTCACCATGCGAGAGagggagatatatatatatatataaatagagagagagagagagattcataCACATTGAcggtacatttttaaaacactaaagTATCGGTACTACACTAAATCAGAGGTGCATTGTGAAACTGTTGGGTCGGCTTTTACTAATTGGTTTCTCCAGCGTTTGTCAGTGTGAACGTTTCCTCCTCTGGTGCTTGTTGATTTTGCATAGGAAGGTACGACCATGAGCGCCAccgtttttattttagcatttcgTAACGAGTCGCAATTTCAAGTCGGGACTCGGGATGACTAGTATTCTTTAACCCTTCGCActtatacaaaaaataatttttttggtcgtttgttgttgttgttgttgatgttgaaaTTTTTACTTGTTCAGAGATTGTTACCCACCAGCActcttgttattgttgttatattattattattattaatactggaGACGTTTTAGTTGATTTCTTTATGTTCTGCCACTGACAAACTACGAatgtcgcaaaaaaaaaaaaacaacgataCAAAAACCAAGTAATAACTATTCTTCCTGTTACTTTCAGTTGTGATTATTTTGCTAGATACTACCTTGGGCTTAACAaagttttgccaaaaaaaaaaaaaaaaaaaaaa
>TCONS_00049712
GTAAACATTGGCAGACACACTGCCTGCCTAGCAATACAGCCAGCTAGCTGACCAGCAGCTCAAACTTGATAATTTAATAGCAGTGCTGTGTTATCTTGTTAGCACCAGGCTAGCTCAAAAATACGTTTGCACGGAAACCTTTTTGGATTTCACTAAGGCCAACGAACAAATCGCGTCATATGTGCACAAAAGGTCACAAATCCCAAGCGTAGGATCCTCTCCGAACCGTAAACCAGAGACCACCTGAAAACTACCATCATCAGCTTAGCCTGCTGCTCCTGACATCTTTTAGTTTTGCTCCTACATACACACATTATTGTGTATAGAATGTGAAGTACTTTAGACGAATACAGAGCCAAGTCTTTTTCTTTAAATGGGGGAAGACGATTCCTGGCCATTTTTATCAGGCCACATATTTTTGGTCAGGTTTTCAGAATTGGAGTCTATCATAAAACCGTAGCCTGATGAACAGATTGCGTGCCCCCCATACACACCTAATCGCAGCCATCCTGACGTCTTTGATGATCGGTTGGTCTGAGATTGATTAGTCAGTCATGAACGGCTCCTTATTAACTCCACCGAGTCCACGGGCTGCGGCTAATTCATCTCCCCTTCCGCCATCCCCTTCTCCATCGCCCTCTCCTCCGTCTCCATCGCTGTTGCCCTTGTCCACCAGACCTCCGCCTTTGCCTCCTCCGACTCCTGTAGGTCAACCCTTGTCTTCGTTATCCGACACACCCACACCATCGCCATCTCCCTGCCTCAGCTGGACCGAGTTCTGTGAGCTCCATGCCCGGGTAGCCGCCGGGGATTTTGCTCGACATTTCCGGGCCTTCCTTCAGGAGAACCCAAATTACTCCCCTGATTCGGCAGCTCTTTTTT
>TCONS_00049713
GACGATTCCTGGCCATTTTTATCAGGCCACATATTTTTGGTCAGGTTTTCAGAATTGGAGTCTATCATAAAACCGTAGCCTGATGAACAGATTGCGTGCCCCCCATACACACCTAATCGCAGCCATCCTGACGTCTTTGATGATCGGTTGGTCTGAGATTGATTAGTCAGTCATGAACGGCTCCTTATTAACTCCACCGAGTCCACGGGCTGCGGCTAATTCATCTCCCCTTCCGCCATCCCCTTCTCCATCGCCCTCTCCTCCGTCTCCATCGCTGTTGCCCTTGTCCACCAGACCTCCGCCTTTGCCTCCTCCGACTCCTGTAGGTCAACCCTTGTCTTCGTTATCCGACACACCCACACCATCGCCATCTCCCTGCCTCAGCTGGACCGAGTTCTGTGAGCTCCATGCCCGGGTAGCCGCCGGGGATTTTGCTCGACATTTCCGGGCCTTCCTTCAGGAGAACCCAAATTACTCCCCTGATTCGGCAGCTCTTTTTTGCCGTCGCTTTACAGACAGATTTGTTCGGCATTTTGAGAGCGAGCTTGAAGTAACTGGTATCAGTAGGGAAGGTACGGTGAATTGGGTCGCCCAATCGGATGTTACCTCGTTAGAGGAGGATGCAGCATCTCCGTCTTTGCTAACGGCGGAATCCGCAGCAGCCTCATGCCCACCTATTCACACACGGGCCACTCCCAAACCTATCCTGACCCAGGAAAGCCGTGGTACAGAACGATTCCAGAACTCTGGAGGCTTTCAGGACTCGTACGCTCACGCGCAGATTCTCCCACCGTCCTCCTCGTCGTCTTGCTCGTCCTCTATGGGTGGAAATAACGGGCGCAGAGAGGAGAGGGGAATGGCCCTCAAACACAATCCTTCAGGATATAAAGACCTAGAGGAAGAGGAAGATAGCTGGGCAGGACCTGTAACTCTGGAGGAGGTAGAGACCGACATCATAGGTAGGGACAATGAGGGCGAGGATTTAGAAAGAGCCGACCTCACCCTCAATCCCTCCAGTGCACCAGCAAACTCGAAAGGCAACGGGACGCCTATTGGAGGTCACTCCAAGAACAAGTTAAAGAAGCGTTTCTCTTTGCGCAGTGTGGGACGGAGTGTCAGGGGTAGTGTGAGGGGCATCTTGCATTGGCGCAGCTCCTCCAGCGACTCCCCGCAGAACTGCAGCAACTCCAGCCCTCTTCCCTCCAGCTACAGCTACACTACTGGCCTGCAGGATGGCAAGAGGAACTCCGGCTCGCAAGGGGTTCCCTCTTCTCTCCCGGTGTCTCTCTCTCTTCCCCTTTCCCTTCCTCACTCCTCGTCCTCTTCACTGCCCCCTTCATCCTCCAGCAGCGCCACTTCTCTTTCGCTCTCTGAGGCCCGCGACTGGCGAAGGAGCAACGGAGATGGCGAGAAGGAGAAATGGAGTCACCGGTTGGAAAAACTACGACTGTCTCGCTCTCCTCCGCCAAATCTGTCCAGCGCAGCTCCTCCATCTTCGGTTTTATCCCCTTCATCGCTCCCACCAAGCAGCATCAACGCCTCCAGGAAGATGGGCAGGCTGGTGCGGGAGGGAGGAGTGACCGTGTGCTCATCTTCGGATGAGTTCGCCAGCACTCACGGGTTCCCAGGCTTTTCCTTTGGACTGCTGCATCACGGCGCAGACAGCTCTGTGTCTGGACATCCCACAGCCATAGGTGGCGCTGTGGGTGGACGGGGTACGCGTTGGCACAAGTGCCGTCTAGTTCTGAAAGAACGAGATAAGGATGGAGGGGATGGAGGGTTGGAATATTTCCTGGAGTTTTACATCCCGCCGAAGtcCTCCAAGCCCAGACTGACTGTCCCATGCTGCTCTATTGTTGACGTGAGGAGCACTACAGCCATTGAGGTGCCAGACAAGGAGAACACCTTCCTTCTACAGATGGAAGGTCAGGTGCAGTACGTGATTGAGACCAGAGATGCGGTTCAGATGAGAGCGTGGCTCAGCGACATCAGAAACGCTATCTGTTTGAGTGAGCAAGAGGATGTTGATGGGGTATGTGGGAGTGCTCTGACTGACCTCAGCGGTACGCCGGAATTCAGCGACCGCCTGTCTCAAGTGTGCTATGGTGGAGTTGGTGGTTCTCCACAGCTGGAGCCTCTACCTCCTGAATTACCGCCCCGCGCCCCTCTGGACGAATCAGATAGTCGGCTGCTTGGTGGGGGCGGAGCCAGTCTCGGCACACCTTTTGCTGAAACCCCTGATGCCACAGGGTCGTTCCTGTTCTCTGATGTGTCTGTGTCTGAGACGGTGGAGCATCCTCTGAGCGAGTGTCAGTGGTTTCACGGTACACTCTCGCGTCTTAAAGCGGCTCAGCTGGTGCTGGCGGGTGGCATGGCCAGTCATGGAGTATTTCTCGTGCGGCAGAGTGAGACACGGCGGGGGGAGTATGTGCTCACCTTCAACTTCCAGGGAAAAGCAAAGCACTTGCGCCTCTCTCTGAACGAGGATGGACAGTGTCGTGTGCAGCATCTCTGGTTCCAGTCTATTTTTGACATGCTGGAGCATTTCCGTGTGCACCCCATTCCCCTGGAGTCTGGGGGTGCCTCTGATGTCACCCTCATCAGCTTTGTGGGGGCTACAAATGTCCGGCAACCAGACTTGACCAGCAGACCCCGTAGTCCTCCCCAACCGCCGCCTCCACCCTTGCCTCCAGGACGCCCCCCGCCCCCAACCCCGCCCCAGGAGCGCGGACCCGAGCCTGAGGTGGCCGGCGGAGGCGGAGCGAGCAGCGGGGCGGAGGAGTGCGAGGAGCGAGAGCGGGAGCCAGCGCTTCTCCAACTGGAAGGGGTGGAGGGAGAAGAGCGCGAAGGAGGAAGAGCGAGAGCTATCGACAACCAGTACTCCTTCTTCTGAACCCAGAACCAGGACAGCCCTTCACAATCAGTATTTTCAGTATTCTCCAACTGACTGATTTAttattaacactattaaacaTGAGCTTTCACCATGCGAGAGagggagatatatatatatatataaatagagagagagagagagattcataCACATTGAcggtacatttttaaaacactaaagTATCGGTACTACACTAAATCAGAGGTGCATTGTGAAACTGTTGGGTCGGCTTTTACTAATTGGTTTCTCCAGCGTTTGTCAGTGTGAACGTTTCCTCCTCTGGTGCTTGTTGATTTTGCATAGGAAGGTACGACCATGAGCGCCAccgtttttattttagcatttcgTAACGAGTCGCAATTTCAAGTCGGGACTCGGGATGACTAGTATTCTTTAACCCTTCGCActtatacaaaaaataatttttttggtcgtttgttgttgttgttgttgatgttgaaaTTTTTACTTGTTCAGAGATTGTTACCCACCAGCActcttgttattgttgttatattattattattattaatactggaGACGTTTTAGTTGATTTCTTTATGTTCTGCCACTGACAAACTACGAatgtcgcaaaaaaaaaaaaacaacgataCAAAAACCAAGTAATAACTATTCTTCCTGTTACTTTCAGTTGTGATTATTTTGCTAGATACTACCTTGGGCTTAACAaagttttgcc

Function

symbol description
sh2b1 Predicted to enable transmembrane receptor protein tyrosine kinase adaptor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in plasma membrane. Orthologous to human SH2B1 (SH2B adaptor protein 1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity molecular_function
GO:0035591 signaling adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-188 Predicted to enable transmembrane receptor protein tyrosine kinase adaptor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in plasma membrane. Orthologous to human SH2B1 (SH2B adaptor protein 1).

Ensembl:

ensembl_id ENSDARG00000057679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049711 False 4210 mRNA 0.51 10 15358459 15392466
TCONS_00049712 False 882 mRNA 0.49 2 15358625 15361378
TCONS_00049713 True 3596 mRNA 0.53 8 15360879 15392444

Neighbor

gene id symbol gene type direction distance location
XLOC_025166 cabp5b coding upstream 41067 15296824 ~ 15317392 (+)
XLOC_025165 asphd1 coding upstream 73766 15271943 ~ 15284693 (+)
XLOC_025164 NA coding upstream 126621 15229952 ~ 15231838 (+)
XLOC_025163 tspan10 coding upstream 172167 15176737 ~ 15186292 (+)
XLOC_025162 nfixb coding upstream 299995 14768364 ~ 15058464 (+)
XLOC_025168 atxn2l coding downstream 1962 15394428 ~ 15425689 (+)
XLOC_025169 NA coding downstream 112718 15505184 ~ 15506157 (+)
XLOC_025170 NA coding downstream 125086 15517552 ~ 15517899 (+)
XLOC_025171 doc2a coding downstream 158056 15550522 ~ 15608166 (+)
XLOC_025172 NA coding downstream 225812 15618278 ~ 15621754 (+)
XLOC_025429 BX649540.1 misc downstream 14856273 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 958807 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 1070618 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 1103694 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 1109921 14242119 ~ 14248538 (+)
XLOC_025173 NA non-coding downstream 246986 15639452 ~ 15646667 (+)
XLOC_025174 NA non-coding downstream 292896 15685362 ~ 15719823 (+)

Expression


Co-expression Network