XLOC_025168 (atxn2l)


Basic Information

Item Value
gene id XLOC_025168
gene name atxn2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15394428 ~ 15425689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049714
CGCGTTCATCGCTGGCTAATTCGCGAGACGTGGTGCCGGTAatatttaatagaaaaaataagGCTTGTTGCCTTTTCGTGTTGCGTTCGCGACGGAATATCGGACCGAACTGGACTTCGCGCTTTAACGGAGATCGCGCTCGTGCGGACCTGAAATCGCCGCggaaaaactacaaaaataacaCCGCAGGCAGGCTAGTCCACATACTAGCTTGTCATAGGCAACAAGGGGAATTTAGCGGGCAACTCAGTTAGCGGCTAGTTATGTCTTTTCGCCGACAGAACCAACCTGGACCCGGTGGCCGCAAAACATCCAATGGAACTTCAGGGTCAATGGCTTCATCCGTTCCGGGGAGCAACTCTAACAGACCCAACCCGGGGAGaaACAGAAACTCCGTGAAGACTCCTTCACAGTCACCACCTGTGTTTGAAGGTGTGTACAACAACTCCCGGATGCTCCATTTTCTCACAGCCGTCGTGgGCTCCAGATGCGATGTTATGGTGAAGAACGGCAGCTTGTATGAGGGAATCTTTAAGACGTTAAGCTCACGTTGTGAGCTGGCAGTGGATGCTGTGCACAAGGTGAAGAATGAGGAAGGAGATGGAGGCGGTGGAGGCGGCACAGCTGTCCATCCCAGGAAAGAAGAGATCACAGACACCATGATCTTTGGCCCTAGTGACCTTGTCACTATGATCTGCAGAGACGTAGACCTCAACTACGCTAcccgagacacTTTCACAGACTCTGCAATTGGCTCATCAAGATTAAACGGTGACCACAGAGAGAAGGTCCTCCAGAGGTGGGATGGAGGCGACAGCAATGGAGAGAACTTTGACTTAGATGCAGACACAGCTAATGGTTGGGATGCCAGTGAGATGTTCCGCTTTAATGAGGAGACCTATGGGGTGAAGTCCACCTATGACTCCAGTCTCTCCATGTACACGGTTCCTCTGGAGCGGGGAAGCTCTGAGGGCTTCAGGCAGCGAGAAGCTCGAGCCGCCCGATTGGCCAATGAGATCGAGGCTAGTTCACAGTATCGCCACAGAGTGGCACTGGAGAATGATGAGGGAAGAACTGATGAAGACAAATTCAGTGCAGTGGTTCGAGACCGGGAGCGTGAAGCAGCAGAAAGAGAAAGGGGAAGAGACAGCCCTGGGTTCTCCAGTGCTGGGAGCAGggaGGGCAAATACATTCCTCCCCAGAGAGCAAGGGAGCGAGAGATGGGAGTTTCTGGCAGGGGTGAAAGAGGTGGGGCTGTGTCCACCCTGCCTAATCGAACAAATCGACCCGGACCATCAAGCTCCTCCCCTAGACCCCTCCCCTCTGCTAACAGCCAGGCCCTTCCTCCCACTGATAGGAACAGCTCTCTGTCAGTCAGAGGAGGATTCTCTACACACCAATCACAGAGCAGCACACCAACACAGTCCCGGCCCTCAGAGCCGGGTCACTCCAGCCCTCCTTCcccccacacactctcacattcactctcACACCCTCAGTCCCTCTCAGATGTGGCCCGGCCTGTCAATGGAGTTTCACCCAAGTCTCAAAGGACTGGACAGACTAACAGAAACATGCGTACCTCAAACTCCCACTCCTCCCCTACAGTCTCTCGCTCCCCTAAGCCAGATGCTCCTCCTCAGGACCCTCTTCTGACTGGATCTTATTTGGACCCCTCATCCAAACCTGTTGGCCCCACTCCTCTGTTCCCTGTAGATGTAAATGAGATCCTGTCGAAGGAAAGGATGGAGAGTCCAGTTGGTCCACAGGAGGGCAAGAGCAACAAAATACCTTCGGTCCAGCAGAGATCACAAATCTCTGAGGAGCTTCGCAAGTTTGGTAATACTTTTAGGcttcaGCAAAACCCCAAAACTTTGCCCACTGAATCTACTCAAGCAAACCCTGCCCACAACACACAGACTGACCCCGCCGCTCCCACAGAAGCAAAACCAGCCCCGCCCACAACCCCGAACACAGAGCTTTCAGCAGAGGAGCGAAGTAGAGAGACTAATCCAGAAGGGCCGGTGACCTCCACCCCTCCACCGGCCACATCCATCTCTGCACCGTCTGGGATTGGCATGCAAAATCCACCTGCAGAAGGGCAGACGGCGGGGGCGCCCCAACCTGCAAGGACCCCAGGCAGTGAGGATGGCAAACCAGAGGCCCCTGAGAGATCTGAGGGCATGACCGATCAGGTGAAGAAATCCACACTCAATCCCAACGCCAAAGAATTCAACCCCACCAAGGCTCCTCTTAGCATGGTGAAGCCCTCGGCGACTCCCACACCACCACGACCAACCCCACCCAGTCCTACAGTCGTGCTGCAGACCCAACCAGGCCAGGGAGCCGTTTATAACCCCCAGTACCTGAGCTACGTCTCCCAGGTACCCATCCAGATTCAAGGCCACTCTGTGCAGcCTCAGATCCCATATTCGTATATGACCGCTGTTAGTCAAGGGAAGTACCCAAGAACAAAAGGTTCTGTGGTAACTCCTCGTCCAGACCACAGCTCTTCAGCGCCCCCTATGATCCAGGCTGCATCAGCAGCAGGACCTCCTCTAGTGGCGTCTCCTTACCCTCCCTCTTATCTACAGTACAACCAGGTCATCCCAGCAATGCCCCACTACCCTGGACACCAAGTATACTCAATGCTCCAGGGTGGACCACGGATGCTTGGATCTGGAGGACACCCACAGGCTCTGGGACCTCCAGGCCCTCAGTACCCAGGTCAGACTGAAGGGCCATCAGCTCCTCAACAGGGGATGTatgCTCCGCAGTCATTCTCTCATCACTCGGGCTCCATTCATCCTCAGCCCTCCAGCACCCCTACAGGCAGCCAGCCGCCCCCTCAACACCCCGCTCCCAGCCCGGGACAGTCTGGTCAGTCTGGTCCTCAGCCTCAGTCTTTGTATCACTCTGGGCCGCTGTCAGCCCCGACCCCTCCTAACCTTCCTCCAGGACACAGCTCTCCACAGGCCTCTTACTCCCTTCAGGGCTACAGTCTGCCGGGACACCAGCCACTGCCGCATCCTTACTCCTCTCTGGGACAGCTCACACAGGCTCATGTTCCCGGTGCTCTGTCGGGTCCACATCACACAGGAGGCCACGGTCCTCCGCCAGTGATGCTGCTTCATGCTGCCCCTCAGCAGGGTTCTGGCCCTCAACACGGCCCGCCACCACAGCAGGGGGCCCACCAGCACTTCACCTACCTAGGACCTCAGGTGCCAGTGCAGGCTCACAATCCCCAGCAGATTCCATATCACCCTTCTGGAAACTGACAGACAGActgagagggagagaaagagagagcgccCCCATCTGGACCTTCTGTGTGACCGCATATGTACATAATCTCCATCTGCTTCACCAACGAGGACAAAAAGATTTCGCTTTTACCTCTGGCAAGACTGAATGTTCTGGTTttatttagggtttttttttttcttcgtaatTTTTAATTTGAGTGGACGGAGACACGCAGTGTCTAAAAGCAGAACGACGAAACGAGTGAGTgtgcaagacaaaacaaaaatggAAAGAATGAgggacatttttataaaaaatacagtgaccTCTCCCTTTGTCCTCAAACCCCCCttattaaataagcaaataataaatggttaaaaaaagaacaaaaaaaataaaaaaaatgtataaaaaataaatttttaaactcTC

Function

symbol description
atxn2l Predicted to enable RNA binding activity. Predicted to be involved in stress granule assembly. Predicted to be active in cytoplasmic stress granule. Orthologous to human ATXN2L (ataxin 2 like).

GO:

id name namespace
GO:0010603 regulation of cytoplasmic mRNA processing body assembly biological_process
GO:0034063 stress granule assembly biological_process
GO:0010494 cytoplasmic stress granule cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3246 Predicted to enable RNA binding activity. Predicted to be involved in stress granule assembly. Predicted to be active in cytoplasmic stress granule. Orthologous to human ATXN2L (ataxin 2 like).

Ensembl:

ensembl_id ENSDARG00000011597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049714 True 3681 mRNA 0.53 24 15394428 15425689

Neighbor

gene id symbol gene type direction distance location
XLOC_025167 sh2b1 coding upstream 1962 15358459 ~ 15392466 (+)
XLOC_025166 cabp5b coding upstream 77036 15296824 ~ 15317392 (+)
XLOC_025165 asphd1 coding upstream 109735 15271943 ~ 15284693 (+)
XLOC_025164 NA coding upstream 162590 15229952 ~ 15231838 (+)
XLOC_025163 tspan10 coding upstream 208136 15176737 ~ 15186292 (+)
XLOC_025169 NA coding downstream 79495 15505184 ~ 15506157 (+)
XLOC_025170 NA coding downstream 91863 15517552 ~ 15517899 (+)
XLOC_025171 doc2a coding downstream 124833 15550522 ~ 15608166 (+)
XLOC_025172 NA coding downstream 192589 15618278 ~ 15621754 (+)
XLOC_025173 NA coding downstream 213763 15639452 ~ 15646667 (+)
XLOC_025429 BX649540.1 misc downstream 14823050 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 994776 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 1106587 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 1139663 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 1145890 14242119 ~ 14248538 (+)
XLOC_025174 NA non-coding downstream 259673 15685362 ~ 15719823 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location