XLOC_002517 (ddx56)


Basic Information

Item Value
gene id XLOC_002517
gene name ddx56
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2856377 ~ 2875735 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004702
ACACGTGTGAAGATGGAGGAGGACAGCGTACGCTTTCATGAGATGGGTTTAGATGATCGACTGTTAAAGGCTCTGGCGGATTTAGGATGGTCTCAACCAACCCTTATCCAGGAGAAAGCCATCCCTCTGGCACTGGAGGGGAAAGATCTGCTGGCCCGAGCTCGAACCGGATCCGGAAAAACAGCCGCCTATGCAGTTCCACTGATCCAGAGAGTCCTCACATCCAAACAGACTGTACGAGAGCAGGCTGTCAGAGCTGTAGTTCTGGTCCCCACCAAGGAGCTGGGCCAGCAGGTCCAAACCATGATCCGCCAGCTCACGGCGTACTGCAGCAGAGACGTCCGAGTCGCAGACATCTCTGGAAAAGCAGATCTGTCTGCTCAGAAGCCCATTTTAATGGAGAAGCCGGATATAGTGGTGAGCACCCCGTCTCGCATTCAGGCTCATATTAACGCTCAGAACCTGCAGCTTCACTCCTCATTAGAGATGCTGGTCATCGACGAGGCCGATCTTCTCTTCTCATTCGGCTTTGAGGCGGATCTGAAAAACCTGCTGTGTCACTTACCCAAGATCTACCAGGCGTTTCTGATGTCGGCCACACTGAATGATGATGTTCAGGCCCTAAAGGAGCTGGTCCTCCACAATCCGGTGACACTGAAGCTCCAGGGCTCTCAGCTGCCCGACAGCTCACAGCTACAGCAGTTCAGCATCAAATGTGAAGAGGAGGACAAGTTCCTGCTCATCTACACGATGCTGAAGCTCGGCCTGATCCAGGGGAAGACGCTCCTCTTCGTCAGCGATGTGGACCGATCGTACCGCCTCAAGCTGTTTTTGGAGCAGTTCAGCATTCCTGCTTGTGTCCTAAACTCTGAGCTGCCCGTTCACTCCAGGTGTCACATCATCAGCCAGTTCAATCAAGGCTTCTACAATTACATCATCGCCTCAGATGAGCAGGGATTGGAGAGTCCCGCTGGAAGCTCACAGAAAACACAAGAGAAAGGGAAGAAGAAGAAGGGCACAGGGAAAAAAGGCAAAGACAAGGAATATGGTGTTTCCAGAGGAATCGACTTCCACAATGTTTCTAATGTGATCAACTTTGACTTTCCAACTTCAGTCGAGTCCTACATCCACCGTGTCGGCAGAACGGCTCGTGCAGATAATCCCGGCACAGCGCTGTCCTTTATTTCTCATGCAGAACTCTCGATGCTCTCAGAGGTTGAAAACGCTCTTACTGGAGACAGCAACAATTGTGTTTTGAAGCCATACGAGTTCAGAATGGAGGAAATCGAGGGATTCAGATACAGATGTCGGGATGGAATGAGATCGGTGACTAAACAGGCGGTGAAGGAGGCCAGACTGAAGGAGATCAAACAGGAGCTGCTCAATTCAGAGAAACTCAAGACTTACTTTGAAGACAATCCCAGAGACCTGCAGCTGCTCCGACACGACAAAGACCTGCATCCCGCCATCATCAAACCTCACATGAAAAACGTGCCTGAATACCTGATCCCGACTGCACTGAAAAGTCTTGTCAACCCTCTGAACCAACGGAGGAAAAGGAAGAAGGTGAAATCCAGCGGTGTGATGCTGAGCAGCTTTAAGaagaATTACAGAGGCAGAAATCCACTAAAGAGTTTTCGCTACGCCAAGAAGAGGCGAGGGGAGAAGAAGGCTGGCAAACCCTAATGGAGACTTTATGGATTTGGAATTTTGAGGACATAGAGCTCTCCTGGAGCTCACTAAACAGCGTATAGTGTGTATCTCACACTCATTTTACACAGGATTCAAGACTTCAGCTTTCAAGTAAAGACCGCAGGACTTCAATtggatgcgtgtgtgtgtgtcagtggtaAGTGGGTTGAGAATCACAGTCTGGACACAACATGAACATTCAGTCGACTGCTTTTGATTAAGTGACTGTTTGAAATGTTCCTTCTGAATATTGAACGTATAAtattgtatgttttgttaatACTAAAAGCTCTACTTCGGA
>TCONS_00004703
ACACGTGTGAAGATGGAGGAGGACAGCGTACGCTTTCATGAGATGGGTTTAGATGATCGACTGTTAAAGGCTCTGGCGGATTTAGGATGGTCTCAACCAACCCTTATCCAGGAGAAAGCCATCCCTCTGGCACTGGAGGGGAAAGATCTGCTGGCCCGAGCTCGAACCGGATCCGGAAAAACAGCCGCCTATGCAGTTCCACTGATCCAGAGAGTCCTCACATCCAAACAGGTGATGCCttgACGTCCGAGTCGCAGACATCTCTGGAAAAGCAGATCTGTCTGCTCAGAAGCCCATTTTAATGGAGAAGCCGGATATAGTGGTGAGCACCCCGTCTCGCATTCAGGCTCATATTAACGCTCAGAACCTGCAGCTTCACTCCTCATTAGAGATGCTGGTCATCGACGAGGCCGATCTTCTCTTCTCATTCGGCTTTGAGGCGGATCTGAAAAACCTGCTGTGTCACTTACCCAAGATCTACCAGGCGTTTCTGATGTCGGCCACACTGAATGATGATGTTCAGGCCCTAAAGGAGCTGGTCCTCCACAATCCGGTGAGTGCAGAAGC
>TCONS_00004704
ACACGTGTGAAGATGGAGGAGGACAGCGTACGCTTTCATGAGATGGGTTTAGATGATCGACTGTTAAAGGGCTCTGGCGGATTTAGGATGGTCTCAACCAACCCTTATCCAGGAGAAAGCCATCCCTCTGGCACTGGAGGGGAAAGATCTGCTGGCCCGAGCTCGAACCGGATCCGGAAAAACAGCCGCCTATGCAGTTCCACTGATCCAGAGAGTCCTCACATCCAAACAGACTGTACGAGAGCAGGCTGTCAGAGCTGTAGTTCTGGTCCCCACCAAGGAGCTGGGCCAGCAGGTCCAAACCATGATCCGCCAGCTCACGGCGTACTGCAGCAGAGACGTCCGAGTCGCAGACATCTCTGGAAAAGCAGATCTGTCTGCTCAGAAGTCAGTGATGCAGCAAATCCTCACACAAATACTGCTGATCCTCATACTGGACTGAATATATGTATTTTGTCTTGCCTCATACAAAATGCAGAATAGATGCATATAAGAATTGAACACAcagaattcaaacaaacaaaatgagcTTCAAGTAGCTGTAATATTATCATTTATCATAGAGGTATTTAATTTTTACCTTTAGTTGCTGACTTTCACACACTGttgtcacacaactgtgtttaaaccccttataaaagcgATCTTTACATAATAAGTcttctttaaatataaaataaatcaaatcaaatgagaAGGGGTAAATAGGGAAGTGTCAAAAGCATAATAGGACatcttttttgtcattttaattccACTAACACTTATAATTCTTCATCTTTTGTTCGCAGGCCCATTTTAATGGAGAAGCCGGATATAGTGGTGAGCACCCCGTCTCGCATTCAGGCTCATATTAACGCTCAGAACCTGCAGCTTCACTCCTCATTAGAGATGCTGGTCATCGACGAGGCCGATCTTCTCTTCTCATTCGGCTTTGAGGCGGATCTGAAAAACCTGCTGTGGTGCGTTTCTGCTCAGAACAGATTCTGATTGCAATTTCTCAACATGAGTGAATAGTCTGTTTTGTTAGCTTCAGCATTTTCTCCCAGCATAAATCAGATTCTCTCAAAATTGCATTGTAGAGAGGAACAGAAAAGGACAATTGTCACTTTTTATTAGTACAGTCAGAAAAACTTAAGATACTGGTATAAATTTGCAAATACAGTTGGAAGTCAGAGTTATtgaaccccctgaattattagccctcttgtatatttttctccccaatttctgtttaagacaggtaagattttttcaacacatttctaatcataatagttttaataactcatttcttgatgacagcacataatatttgactagatgttttacAAGATACTGGTAGTATtgcgcttaaagtgacatttaaaggcttaactagggtaattaggctaattagacaggtcattgtataacaggggTTTTATATTTCctaagggtctaataattttgaccttaaaatggttttaaaaatataaaactgcttttattctagctgaaatgaaacaaataagactttctccagaagaaaaaacattattgcACATACTGTGGAAAAAGTCCTCAATCTTTTgattcatttgagaaatattttaaagaaataaaa

Function

symbol description
ddx56 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

GO:

id name namespace
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040825-3 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

Ensembl:

ensembl_id ENSDARG00000020913

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004702 False 1993 mRNA 0.49 14 2856377 2875735
TCONS_00004703 False 567 processed_transcript 0.52 5 2866720 2875735
TCONS_00004704 True 1606 processed_transcript 0.39 3 2868478 2875735

Neighbor

gene id symbol gene type direction distance location
XLOC_002516 ash2l coding downstream 67585 2759226 ~ 2788792 (-)
XLOC_002515 mier3a coding downstream 143137 2695464 ~ 2713240 (-)
XLOC_002514 pdxp coding downstream 174179 2680079 ~ 2682198 (-)
XLOC_002513 CU856539.3 coding downstream 252576 2573161 ~ 2603801 (-)
XLOC_002512 CU856539.1 coding downstream 329035 2499383 ~ 2527342 (-)
XLOC_002518 NA coding upstream 22244 2897979 ~ 2899304 (-)
XLOC_002519 oclna coding upstream 49040 2924775 ~ 2943474 (-)
XLOC_002520 marveld2a coding upstream 67941 2943676 ~ 2971407 (-)
XLOC_002521 ankrd34ba coding upstream 155901 3031636 ~ 3033270 (-)
XLOC_002522 ube2l3a coding upstream 257363 3133098 ~ 3138859 (-)
XLOC_002510 NA non-coding downstream 902918 1948097 ~ 1953459 (-)
XLOC_002506 NA non-coding downstream 1115202 1678283 ~ 1741175 (-)
XLOC_002505 NA non-coding downstream 1137740 1669144 ~ 1718637 (-)
XLOC_002504 NA non-coding downstream 1188747 1666342 ~ 1667630 (-)
XLOC_002502 CABZ01066320.1 non-coding downstream 1303588 1544163 ~ 1552789 (-)
XLOC_002525 NA non-coding upstream 446402 3322137 ~ 3332362 (-)
XLOC_002529 CU571170.1 non-coding upstream 630805 3506540 ~ 3506654 (-)
XLOC_002530 FP236598.1 non-coding upstream 892916 3768651 ~ 3768766 (-)
XLOC_002531 NA non-coding upstream 1078355 3954090 ~ 3956849 (-)

Expression


Co-expression Network