G577876 (LOC106575485)


Basic Information

Item Value
gene id G577876
gene name LOC106575485
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14961205 ~ 14971607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659120
TGTGTTCCATTAAGTTTAATTTCTTTGTGATACAAAACTCATCTTTACAGCCCTCCAGAGAAAGCTGGCATTACCTTTATATCAAAATATACATGTTGGAATCAACGTTTGTTAACTATATATCAAAATATACATGTTGGAATGAAATGGAATCTGTGGTACAATCCAAATCACTGTGGTACAAAAACACTAAATATAGACAGACAAAAACCCTCCCCCTGCTTCATGACATCACATCCTGTTGACCCCTGACCCCAATAAAACCCATAATGGAAAATAAAAGCGACAACCGTTGCCAGGAAAGGAACACAGAACTACCTCACAGCTATCCACTGTGATATCATCAACTAggtcaacatacagtatatattcatgCTTAAAGTACTCTACCAACAGCGGAATTTAACTGTAATTAATAAGAAATGGGCCAAGAAACCAAATATCACAAATTCAAGGTATAACTCACTCAAAATTACGATTTTTAAATCTAGTGGCCAACTGATTAGGTATAAAATGAAAACAAAATCAAATCCCTAAAGGCGATTTGGACCATAGAATCAAACCAATGGGAGAAGAGAGTTTAGAACGTTGTCTTTTACACTGACACGGATCGTTTAAGTAGCAGGGGTGGTAGGTACTTTGGTCCTCAATAACATCAACCATCAATAGCTACATGAAACAATTTATGCTACAGAAGAATCTATAGCAAAAGCCATATATAGATAGTCAGTGACAGAACAAAGGTAATAAATACGTTTGTGTTGTAGGCACTAAATACCTAAGGCTGTATGAAATAAAATTGGAGAATTGCATGTGTGTATCTGTAAAATATTAGGGGTGAAGTAGGCACTAAAGACTAAATGCTGCATGATTTTAAATGGCACCCCTGGAGCAAGAATTAAGACTTGAGGCACAGTGACCGGTAGATATCAAACAGTACACGGTATAGAAAATGATAAGAGTATAGAACTACTAATGTTACAAAAATACAATGGAATGCATAGTGTACATCTAGAAACCAAAAAGGTAAGACCACAGCcatatatttcaaatcaaattattgATGTTcaaagaaatatatttttttaagagtCCAAATCGTATAAAATCAATGTAATAGCATGGAAAGGCTAGCCGGCTGGTCTGGTTAAGGCACTAGACTGTTGCGGAAAGGCATTTTGTTAGAGCAATATGACTAGTGGTGAAGATCCCAAGGACAGACAgtagaaacagaaaacattaatcaatggatttttttttttttaagtatatcAAATGAAAAAACATTGTAATCTAGAAACAGAAGGACTAGATGTGCATTCTGCAGAGTGTAGAAACAGAAATACTAGATGTGTATCTTGGAGAGTTCTATGAGTTTCCCTCCATAGAAGTCGAACTACTAAAATAAAATATGAACCGATTATATCCATAGTAAACGTAAATAATTGTGTAAAAATAATGATAAAACTTAAACAAGTATAAAGGAATGATTAAGTGTCTCGTGTAGAACAAGACTTGACATACAAACGACGTGGAAGGCATTCTGATGAACAGGTTTGGTCTATACTCTAGTTACAGCTGTGTGTGAGTGATTGTGTTAGATGGTAGATTTGGAGAAAGACACTCTGAGGTGGTGGTTATCTCCCAGGTCATGGTTGTGGAACTCGATGAGACTCTCAACAGCTTCCTCCACTGAGCTCATCTGGATCAGAGCCATTTTACGGTCCTTCTGGAAGAACTTGAAGGCCGTGACTGAAGCTCCTGAACTGCTGAACAGTGCCTTCAGATCCTCCTCCCCTACTGCaggaggtATGTTGGAGAGGTGCAGTGTGCCAGAGGGAGGGTAGATGTTGTTGTAGTTTTTGGAGCCAGGCTTCTTAAAacggtggagaggagaggtggcataGTCCTTTGTCAACCCCTGGTCCTCATGGCCTTCTCTGGGCAGCTGTACGGTGGTGTGTTTAGACATGGAGACACGTAGAGACCGGCCATGGAGACGCACCCCGTTCAGGTGGCTCATCGcTAGCTGAGCCTGTGTGCCATCAGCCATCTGGACCAGAGCGTTGTCCTTCTTATTGAACAGAATCTTCACTCTCATCACGTCGCCATACACAcCAAAGAGAATAAAGAGGCAGTTTGGTGTAACGCTCTCTGGGTTGAGGTTGCTGACCAATAGGACGCCAGCTTGTCCTCCTCCACCGCCGAGGGCTTGCAGGCCGAGACGACTAGCGGCCATGCCCCCTGGACCCATACCAAATGACGCCAAGGCACCGGGCATAGACAAACCTGCTGCCTGCTGTAGAGTGAAGGCCTGGGGGAATCCGTGTCCATACGGAGACGCTGAGATCAGACCTGGAGACCCGAAGGCGGCAGCAGCCATCGCGTGCTGGTCCATTCCAGGCTGAGGGTTGTGTTGCTCTCCAGTAGAAAGGTCAGGTCTGGTGTAGTCACGGCTCTTATCGTTGTTAAACTTCACGTTGAGGCTGGTCAGCTTGGAGAAACTCACCCTCAGAGTACAGCAACCGTTATAGATGTTCTGACCGTCtagagaCATTTTGGTGTGCTGTGCCGTCATGGGGTCAGCGTATTGGACCAGAGCCTGGAACTGGTTGTTCTTAGTGAAGGTGATGATCTTCAGAACAGACCCATACTTGGAGAAGATCTGGTGCAGGACTTCCAGTGTGACGGGGTAGAAGAGGTTTTCCACTATGACTCTAAGGACAGGGCTCTGGGTGGCCATGCCTCTggctcccatctctccccctccaacTGACATGGTAGCACCCATTACACCCCCCATACCGGACATGGTAGAGCCCAACATGGTGCCACCCTGGACAGCATTCACCGCCTGCAGTGCTGCCTGGACTCTTACTTGGTTAGGTGAGTTGTCGGTCTTGAGTTCCTTGTGGTTGCTGTACTGCATGAATACAGGCTGCTGTCTGATGAGGGGGGTGACCGTAGCGTAGTAGTTCACCATGGTCTGAGCCTGGTCCACAGTGTTCATCTCCAGGAacgcCTGGTTCTTTCCCTTCATCATCAGAAGGTTGGTGACCTTCCCAAAGGGCATTCCCATGCTGATGACCTCAGAATCCTGGATGTCCCCGGGCAGCTGGCGCAGGTGGATGACACGCGATGGAGCGCTGGGGCTCCGCATCTCACCTTTGAACTTCTTACTGTCATTACCGTTGGctggggtcATGATGTAGGAGGAGAAGAGTTCATCAGATCCCCTCTTGGTACCCACTGAgacaTCTATGTCTGTGACGTAGCCAGGTCCCATAGGATACAGATCAGCATCTAATTTGTGTCCTTCCATCGTTCGATATAATCCACAGGTCTCTGGAACGGC

Function

NR:

description
polypyrimidine tract-binding protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659120 True 3355 TUCP 0.45 17 14961205 14971607

Neighbor

gene id symbol gene type direction distance location
LOC110527376 LOC106575451 coding upstream 29455 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 34165 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 40164 14914708 ~ 14921041 (+)
LOC110527369 LOC106575456 coding upstream 48537 14903653 ~ 14912668 (+)
LOC110527365 NA coding upstream 58324 14877723 ~ 14902881 (+)
LOC110519434 LOC106591654 coding downstream 20222 14991829 ~ 15002558 (+)
LOC110527389 LOC106575481 coding downstream 115851 15087458 ~ 15091885 (+)
trnar-ccu NA coding downstream 357037 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 359487 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 362188 15333795 ~ 15333865 (+)
G577888 NA non-coding upstream 71377 14888390 ~ 14889828 (+)
G577873 NA non-coding upstream 78898 14876748 ~ 14882307 (+)
G577870 NA non-coding upstream 91759 14869215 ~ 14869446 (+)
G577868 NA non-coding upstream 93484 14867499 ~ 14867721 (+)
G577836 NA non-coding upstream 157896 14803090 ~ 14803309 (+)
G577909 NA non-coding downstream 1018 14972625 ~ 15014535 (+)
G577927 NA non-coding downstream 47950 15019557 ~ 15020204 (+)
G577932 NA non-coding downstream 53053 15024660 ~ 15024868 (+)
G577960 NA non-coding downstream 109241 15080848 ~ 15081268 (+)
G577967 NA non-coding downstream 121515 15093122 ~ 15093386 (+)
G577561 NA other upstream 554607 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 730273 14218353 ~ 14230983 (+)
G577261 NA other upstream 781141 14172523 ~ 14180064 (+)
LOC110527359 LOC106574634 other upstream 808581 14146070 ~ 14159585 (+)
G577180 LOC106574637 other upstream 844860 14115016 ~ 14116345 (+)
G578031 NA other downstream 283564 15255171 ~ 15256207 (+)
G578389 NA other downstream 490638 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 521294 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 1022051 15993464 ~ 16004993 (+)

Expression


Co-expression Network