XLOC_025176 (BX914211.1)


Basic Information

Item Value
gene id XLOC_025176
gene name BX914211.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15755723 ~ 15795396 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049721
GATATGCGAGACTCAAGCCATCAGACACGTAGCGATGGCTTGTAAAGCAAAACACCGCTGGATTCCAGCAGCAGAACATTTAAGATAGTCAGTGTGCGCGTGCACGCGAACGCGCGCTGCTTGCCAAAAAACTCACAGCGCTCGCTGAGAAAGAGTTTGTCTGaaactagtgtttttttttgttttcttctgaaGATTTGTGTTTCATCCGACACAACTTGAGGCTCGCGGTATGAGGGAGAGGGCGCTCGTGTCTCGGGTAGCGTCTAGCTGCGGGGTGCTAATTCGGAGCAGTTGGTGATGACTGCAAGATCTAAGCGTTGAGTTGAACAGCAAAGAGACGCCATCACATcacagagaaagagaggaggCGGCTTTTTGTGTCTGAATCAGCAGAGATTGCAGATGAGGCGCCGCTATTGTTTCTCCAAGTGAAATGGAGATGCT
>TCONS_00049722
GTAGCGTCTAGCTGCGGGGTGCTAATTCGGAGCAGTTGGTGATGACTGCAAGATCTAAGCGTTGAGTTGAACAGCAAAGAGACGCCATCACATcacagagaaagagaggaggCGGCTTTTTGTGTCTGAATCAGCAGAGATTGCAGATGAGGCGCCGCTATTGTTTCTCCAAGTGAAATGGAGATGCTGTCAAACAACTAAAGCTGTGACATAAAGCAAAGACAACTTTGATTTGGGATGAAATGCGTGCATGCCGCTGCACATTGAGGCAGAATTCAGTGCAAGTAATGGAGGCTCAGTTTGGCCTTGGCTAAAGCTTCTCTTCTAGTATCTCCTCCTTTACACCCTCCTCTCGTTCAACAGAGAGGAGGGGTACATTTGACCCTCTACATCAGGACTGGATAGTCTCAAACATAAAGAGGCAAACACTTTTGTCGAGCAGGAGGTCAACTGCCCATGAAGTCCTGCCAGACACTGAGGGAAGAGCTGTCCGGCCTGGAGGCGATGACCGAAGAAGAGCGGCCAATGACGCAACCTTCCCAAACGTACATCCACAACACCTCCGCTCCTCATTCTGAACTATCGCCCAAGATTTACAAGCGAGAAGCTGAGGATACACCGTACTCCTTGGCCATCGACAGCACAATGGCTACAGATTCGCAAATGCCCTCAGAGCTGAACCCTGCCCCGAATCAGCCGTTTTACCGGGAAGGGGCTCCGGCAAAGACTGGAAACGGAGGAACATCGGATGATTCGGAAGCTGACGATTCAGGAGCCGGAGCGGAGGACGAGTTTAAACGAGGGCAGATCATCGTTGAGGTCAACCTAAATAACCAAACCCTGCACGTGTCCAAAGGAGACGATGCGGGGAACGCTGCCGGAGATAAGAGCAATAgtgaggaggatgaagatgaggatgatgaggaggaggaggaggaagaggacaGTGTTGAAGAGAACTACAGTGATCTGGATGAagatgaagaagaggaggaggagaataATAGTCGGCGTACAAGAGCACAGCGGGCGCAGAGGGGACGGACCACCGCTCAGCCGCGCCGAAAAAGTCGTCGAGTCGCTGCTTCGAGTGTGACATCATCTGGTGTGACCACCAGGGGGCGGAGGAAGCATGCGGAAGCCCCGCCCCAAAAGTGCAGACCAGCCAAGGAGGCCAAAAGCTCCGCCTCTTCTGCATCTGGAGCCACACCCACTGGAGGAGGTGCCAAGGGAGAGGGGGAGGAGAAAGAGACGCTGGCGTGTGAAAAATGCCCGCGCGTGTTTAACACTCGCTGGTACCTGGAGAAGCACATGAACGTGACGCACAGGCGCATGCAGATCTGCGACAAGTGTGGGAAGAAGTTCGTGTTGGAGAGTGAGCTGGCTCTGCACCAGCAGACAGACTGCGAGAAGAATATTCAGTGTGTGTCATGTAATAAGTCCTTTAAGAAGCTGTGGTCCCTCCACGAGCATATCAAGATTGTCCATGGATTCGCAGAGAAGAAATTTGCCTGTGAGATTTGTGAGAAGAAATTCTACACTATGGCCCATGTCCGAAAGCACATGGTCGCTCACACAAAGGACATGCCGTTTACCTGTGAAACCTGTGGAAAGTCTTTCAAGCGCAGCATGTCCCTCAAAGTGCACTCGCTGCAGCATTCAGGAGAGAAACCCTTCCGCTGTGAGAACTGCGACGAGAGGTTCCAGTACAAAtaccagctgcgctctcacatgAGCATCCACATCGGACACAAGCAGTTCATGTGCCAGTGGTGTGGCAAAGACTTCAACATGAAGCAGTATTTCGACGAGCACATGAAGACACACACAGGTGAGAAGCCGTTCATCTGTGAGATCTGTGGGAAGAGCTTCACCAGTCGGCCCAATATGAAGCGGCACCGGCGAACACACACCGGGGAAAAACCATACCCATGTGAAATCTGCGGCCAGCGTTTCCGCTTTTCCAACATGCTCAAAGCACACCGAGAGAAGTGTTTCCGGGTCACCAGCCCAGTGAGCCTTCAGCCCACCACCATGACCCTTCCTATACACCTCACAGGCCACGCCCCTTCATCAAGCCACACCCCTAGCCCTTCCCAGGCTGCTCAGCCGATGCCAGTAGGCTCAGTAATGATCAGTCCAGCAGTGAGCGGACCACTGCCGCAAAGAGCGGTCACCGCTCACAGCTTCACTCACTTACACATGCAGACCACGCCCACACACCACTCCCACACCCCTGTCCATCACACAGGACACGCCCCAATGACAAGCCACGCccctcagccaatcacagtccaGCCTTCAGTCCTGCCTCCGCCTCCCGCCCTGTTCAAGAGCGAGCCGATTAACCACTGCGCGCACGAGGACTCATACCTGCGGCAGGGCAGCGCTCCACACCACTGA
>TCONS_00049723
TTGAAGAGAACTACAGTGATCTGGATGAagatgaagaagaggaggaggagaataATAGTCGGCGTACAAGAGCACAGCGGGCGCAGAGGGGACGGACCACCGCTCAGCCGCGCCGAAAAAGTCGTCGAGTCGCTGCTTCGAGTGTGACATCATCTGGTGTGACCACCAGGGGGCGGAGGAAGCATGCGGAAGCCCCGCCCCAAAAGTGCAGACCAGCCAAGGAGGCCAAAAGCTCCGCCTCTTCTGCATCTGGAGCCACACCCACTGGAGGAGGAGAAAGAGACGCTGGCGTGTGAAAAATGCCCGCGCGTGTTTAACACTCGCTGGTACCTGGAGAAGCACATGAACGTGACGCACAGGCGCATGCAGATCTGCGACAAGTGTGGGAAGAAGTTCGTGTTGGAGAGTGAGCTGGCTCTGCACCAGCAGACAGACTGCGAGAAGAATATTCAGTGTGTGTCATGTAATAAGTCCTTTAAGAAGCTGTGGTCCCTCCACGAGCATATCAAGATTGTCCATGGATTCGCAGAGAAGAAATTTGCCTGTGAGATTTGTGAGAAGAAATTCTACACTATGGCCCATGTCCGAAAGCACATGGTCGCTCACACAAAGGACATGCCGTTTACCTGTGAAACCTGTGGAAAGTCTTTCAAGCGCAGCATGTCCCTCAAAGTGCACTCGCTGCAGCATTCAGGAGAGAAACCCTTCCGCTGTGAGAACTGCGACGAGAGGTTCCAGTACAAAtaccagctgcgctctcacatgAGCATCCACATCGGACACAAGCAGTTCATGTGCCAGTGGTGTGGCAAAGACTTCAACATGAAGCAGTATTTCGACGAGCACATGAAGACACACACAGGTGAGGTGAGAAGCCGTTCATCTGTGAGATCTGTGGGAAGAGCTTCACCAGTCGGCCCAATATGAAGCGGCACCGGCGAACACACACCGGGGAAAAACCATACCCATGTGAAATCTGCGGCCAGCGTTTCCGCTTTTCCAACATGCTCAAAGCACACCGAGAGAAGTGTTTCCGGGTCACCAGCCCAGTGAGCCTTCAGCCCACCACCATGACCCTTCCTATACACCTCACAGGCCACGCCCCTTCATCAAGCCACACCCCTAGCCCTTCCCAGGCTGCTCAGCCGATGCC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5857 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF652 (zinc finger protein 652).

Ensembl:

ensembl_id ENSDARG00000062302 ENSDARG00000094116

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049721 False 447 processed_transcript 0.49 2 15755723 15774178
TCONS_00049722 False 2403 mRNA 0.54 6 15773991 15795396
TCONS_00049723 True 1153 mRNA 0.54 6 15776446 15795110

Neighbor

gene id symbol gene type direction distance location
XLOC_025175 phb coding upstream 8724 15736811 ~ 15746999 (+)
XLOC_025174 NA coding upstream 35900 15685362 ~ 15719823 (+)
XLOC_025173 NA coding upstream 109056 15639452 ~ 15646667 (+)
XLOC_025172 NA coding upstream 133969 15618278 ~ 15621754 (+)
XLOC_025171 doc2a coding upstream 147557 15550522 ~ 15608166 (+)
XLOC_025177 phospho1 coding downstream 10521 15805917 ~ 15811037 (+)
XLOC_025178 natd1 coding downstream 22248 15817644 ~ 15824100 (+)
XLOC_025179 tmem11 coding downstream 33030 15828426 ~ 15836140 (+)
XLOC_025180 NA coding downstream 70525 15865921 ~ 15866402 (+)
XLOC_025181 jpt2 coding downstream 97643 15893039 ~ 15902229 (+)
XLOC_025429 BX649540.1 misc downstream 14453343 30248739 ~ 30249036 (+)
XLOC_025170 NA non-coding upstream 237824 15517552 ~ 15517899 (+)
XLOC_025169 NA non-coding upstream 249566 15505184 ~ 15506157 (+)
XLOC_025183 CR387933.1 non-coding downstream 259613 16055009 ~ 16055732 (+)
XLOC_025184 NA non-coding downstream 357828 16153224 ~ 16161459 (+)
XLOC_025185 NA non-coding downstream 391197 16186593 ~ 16241340 (+)
XLOC_025188 CR388224.1 non-coding downstream 577616 16373012 ~ 16373127 (+)

Expression


Co-expression Network