G577968 (LOC106591672)


Basic Information

Item Value
gene id G577968
gene name LOC106591672
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15094226 ~ 15100578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659255
GTTTCATTGTTGCATGGAGGCGATATCGACAACTCAGATTAAACAAGTGCACTCAGGAGCAGAAACACACATAGGGCCAGcattcaaaatggcaccctattccctttatagtgtactacttttggccagagtcctgatagggtgtcatttcagatgAAGTCAAAAACAATAACAGAAAACCCCAAATACATCAGAACATTTTACAACTTCAGATAGCAAAACTAAACTACAGAAGAAAAACAAATATCTAGTCAGCAAACTGAAGCCAGTCTCAACATCCCACAAAGACAGCCAGCCAcagcaggagagagatagaggcaggaaTTCAATTGCAGTGCATTTCGTTGACCTATTGAATAAACCAGCAATTTAATCAATGTGGATAGCTGGTGTTAATTTATATCACCCGTCCCTAAATGGGCTTTAGGAAGCAGTTAGGAAGATTGTTGACATTCTGTGCGGTTCAAACCGGAATGCATTATGATTGAATACCCGGAAGTGGACAGAAACATGGCACACCTTCTCCCGAGACAAAATGAACAAACAAACAGCACCTCAGACTTTAAAAGCAGCAGTGGCAACATTCTCTTTAGTGTTGTAATAAaatagtgttttttgttttttaatgtttttataaCCTTCTAATTTGCCTACTTTAGACTGTAATAAATGTTATAAGATCTTTAaaagaacattttatttttttaacttaacCTTAACCGACTAGAGATAGAAGAAGTTAAAAATATAAGCTCTCGCCGTTACCTCCCAAGCTGAGCTCTGATTGGGCGAAATACAAGAAGTGAAAGTGGATAAACCTCACCCACTTACTGTGGAGGCCCACCATTGGAGGAGCATAGGTGTGGGCGTGACCAAGCAATAGAAAAATACTATTTTTGTTTGATAGTGTTTCCTCATGTTTTTGTGTCGATGCTGTTgaatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactttagctagtgaatgtaactgtgtgtatttactctACCTAGTGAATGTAACTGTATGTATTTACTCTAGCTAGTGAATGTAACTATGTATTTACTCTAGCTAGTGAATGTAACTATGTATTTACTTTAGCTAGTgaatgtaactgtgtgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtatgtatttactctagctagtgaatgtaactgtgtgtatttactctagctagtgaatgtaactgaatgtatttactctagctagtgatgtaactgtgtgtatttactctAGCTAGTGAATGTAACTGAATGTATTTACTCTAGCTAGTGAATGTAACTGAATGTATTTACTCTACCTAGTGAATGTAACTGAATTtatttactctagctagtgaatgtaactgaatgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgaattgatttactctagctagtgaatgtaactgaatgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgaatgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctagctagtgaatgtaactgtatgtatttactctagctagtgatgtaactgtgtgtatttactctagctagtgaatgcaactgtgtgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtatgtatttactctagctagtgaatgtaactgtgtgtatttactctagctagtgaatgttactgtatgtatttactctagctagtgatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctACCTAGTgatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctACCTAGTgatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctACCTAGTgatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctagctagtgaatgtaactgtatgtatttactctagctagtgatgtaactgtgtgtatttactctACCTAGTGAATGTAACTGAATGTATTTACTctaactagtgaatgtaactgaatgtatttactctagctagtgtatgtaactgtgtgtatttactctACCTAGTgatgtaactgtgtgtatttactctACCTAGTgatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctagctagtgaatgtaactgaatgtatttactctagctagtgatgtaactgtgtgtatttactctagctagtgatgtaactgtgtgtatttactctagctagtgaatgtaactgaatgtatttactctagctagtgatgtaactgtgtgtatttactctAGCTAGTGAATGTAACTGAATGTATTTACTctaactagtgaatgtaactgtgtgtatttactctACCTAGTGAATGTAACTGAATGTATTTAATCTAGCTAGTgatgtaactgtgtgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctagctagtgaatgtaactgaatgtatttactctagctagtgaatgtaactgtgtgtatttactctagctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctacctagtgaatgtaactgtgtgtatttactctACCTAGTGAATGTAACTATGTATTTACTCTAGCTAGTGAATGTAACTTTATGTATTTACTCTACCTAGTGAATGTAACTGTATGTATTTACTCTAGCTAGTGAATGTAACTGAATGTATTTACTCTACCTAGTgaatgtaactgtgtgtatttactctACCTAGTGAATGTAACTATGTATTTACTCTAGCTAGTgaatgtaactgtgtgtatttactctagctagtgaatgtaactgaatgtatttactctagctagtgaatgtaactgtgtgtatttactctagctagtgaatgtaactgtatgtatttactctagctagtgaatgtaactgtgtgtatttactctAGCTAGTGAATGTAACTGTGTATATTTACTCTAGCTAGTGAATGTAACTGCATGTGTCTACTCTACCAAGTGTTTTCAGTAAAACTTGAATTCTGCTTAAAAATGGCTTCTAAACCATTATTAGATTATTAACCCTTAGTTAACTTGTTTCAATAGAAAAATTACATTATTTGGGTCTTTTTATATTTGGTTCCAGGTGGATCCTGATTGAATAGTTAACATTCATAATTGAGTTTGACCTAAACAAACCCTGTTGTAGTGATTATGAACCGTTCATAAGCAGAACAAAGTATACCGTGAGTGACTTCAATCTATTGTACAGGTCTATGCCCCACTGGACAATTCTCATTGTTGTTTTGTTCTCTACAAAGTTAACAAATGTTGTGGACTTTGGCTTACCTTGTAAACACAGGGTGTGGGGGTAAGGGGTGGAGTGAGCGGtggtgaggggtggagatgaaACCATAGAACCACCAACTCCTAAATTTGCTACATATCATACCCCAGTTCCAGATCGACCAGTCCCCTTCACCCTATAGTTTCCCTTATCAAGGATCAGGGGTCAGTTTGGAGTAGGGTGCTGTTAGTTCTAGAATGTCTCTTAGCTGTCGGTCACCACATGCAAATACAGCATCTACAACCATGCTATACACATTAGCATGCTATCACATACACCAGCCAGCCACGTCACATAGCCACAggcatggaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccgcgcacacacagagacataataTTTACAGTAAGGAGCACAGAGTACCTACTGAAGCCCCTTTCTGGTTTTGGGTTCagctgaactgtgtgtgtgtgtgtgtgtgtgtctgtttcactGGACAACACAAGCGAGCCCACCCCTGAACAGCAGAGAGAACCCTGGGTAGTGGTTAGGGATAGAGGTCAGCATTTAGGGGTCGTGGGGAGTAGGAGGGATCGCGTGGCATCTTTAGTTTAGTGCATTTGACAAGTAAGGCTTCCCCAAGGGGGCGGAGACCATAGAATTAGAGGGTTCTATGTGACTAAACACTCAGAAATATTTGTCTGATGTGAGAGCAATTCTCATCTCGTGTTCTTTCTAATATAGTAACGTTCATTTGGAGATTTAGCACACCTgtaggcagagcagagcagggtggCGTCCATAACTCTTTTTAGAACAAATCTGTCATTTAGAACCTTTCCATTCTGAGCTCTAGTAacacagcaacaggggcagggggggggggggtgattcaTAGAGTGGGATGGAGCAAAATAAGTCACAAACACACTCCACTGGTAAGACCCTGAAGGGGACACAAATACAAGGTGTAAAagcgtacacacacgcacgcatgcacacacacagcccccaaaaaacacacacacgtgcacacacagatGAAGGCACTATTGCAAGCAAAGTCCAATTACTATGTGACACAAAAAACCCATCAGCCACCCATTCCCAGATAGAGACTGGAGAGGCGGGTGTGTGTCtaagagtgtctgtgtgtgtgtagctagtTTCCTCTCTGTGAGATGAGAGAAGCAGCAGACACCTGGACCAGTGACAGGAAGTGACCTTGGCTCAGCGCTCTGACAGCTTCCCGTGTGTGTGGTGAACCAGGAAATGCTGACTCGTCGCTCCCAGTCTGTCATCACTCTGGACTGTCTATAGTGAGAGGAAAATACCTTCACTGTATGCCCATCACCAAATCAACCCAAAGACCCCGCCCACTGTTTCTGATTGGTAGTCTACAGCTTTCCTCCATAGGATCATACTTCCTTTGGAACTCAATGAAAAAAAAGACGTTTTTAAATAAGTAACAAGGGACCCACACATTCACATGgacgcactcactcactcgcacgcacgcacgcaggcagcCGGCAGTAGGCAGTACATTCAGGTGTTTACAACAGTAACATCTATCACTTCTCTCGGAAACATCCGTCCATCTGTCCATCATTCCTTTCTTCTCAGAAATCCATTGGGTCTTCCTCCGCTAGCGCTCTCTTAGCTCCTCCCTTTGGATCCGtccaatcatcatcatcagccgTGGGGGGTACCAGCCCTGACCCGTCAACACCGTCTGGTGCGGCCCAGGGGTCGTTGTTGCTAGGGGGGTAGAGGTCGTCGTCAACGCTGAAGCCTGAGAAGCCGTCGTCCACCCCGGCATGGTGACCATCGTAGCGCTGGTATGTAGACGCATGGACCTCCTGCTCCCTGGACCTGATCTCCAAAGTACTGTTCCATATCCCATAACCAAAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659255 True 5785 lncRNA 0.40 2 15094226 15100578

Neighbor

gene id symbol gene type direction distance location
LOC110527389 LOC106575481 coding upstream 2341 15087458 ~ 15091885 (+)
LOC110519434 LOC106591654 coding upstream 91668 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 162476 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 167186 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 173185 14914708 ~ 14921041 (+)
trnar-ccu NA coding downstream 228066 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 230516 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 233217 15333795 ~ 15333865 (+)
trnar-ccu-4 NA coding downstream 234583 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 247065 15347643 ~ 15347715 (+)
G577967 NA non-coding upstream 840 15093122 ~ 15093386 (+)
G577960 NA non-coding upstream 12958 15080848 ~ 15081268 (+)
G577932 NA non-coding upstream 69358 15024660 ~ 15024868 (+)
G577927 NA non-coding upstream 74022 15019557 ~ 15020204 (+)
G577909 NA non-coding upstream 119622 14972625 ~ 15014535 (+)
G577944 NA non-coding downstream 2172 15102750 ~ 15103287 (+)
G578005 NA non-coding downstream 81583 15182161 ~ 15184248 (+)
G578011 NA non-coding downstream 92623 15193201 ~ 15193739 (+)
G578012 NA non-coding downstream 93548 15194126 ~ 15194436 (+)
G578013 LOC106575464 non-coding downstream 95090 15195668 ~ 15198020 (+)
G577876 LOC106575485 other upstream 122619 14961205 ~ 14971607 (+)
G577561 NA other upstream 687628 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 863294 14218353 ~ 14230983 (+)
G577261 NA other upstream 914162 14172523 ~ 14180064 (+)
G578031 NA other downstream 154593 15255171 ~ 15256207 (+)
G578389 NA other downstream 361667 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 392323 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 893080 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 945705 16046065 ~ 16048048 (+)

Expression


Co-expression Network