G578013 (LOC106575464)


Basic Information

Item Value
gene id G578013
gene name LOC106575464
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15195668 ~ 15198020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659300
cttctatatttccatcaaccctgtcttgtggatttggccataggttctcatccacatcacaatggatgttttcgTTAGCccaacatcttgggaagaatcttcaggcatggtgaatccaggcctgacactggtctgcagtggtgtcattgcatggtgaatccaggcctgacactggtctgccgtgatgtcattgcatgcgtcatccatggcctgtagaagggtggcttgttcgtgagggcgcctatcatataccttccacctccatgtggagaaaaaGTCCTCTATCAGGTAAGTACAGGGTGGCAAATTGCGGATGGGAATTGCGGATGGGCCTGAAAacatgcttgcaccatttgagcatggtggaacctgacattatcccacacaatgacataggtcatgccatcagctctacagatctgatttagctcatcaaggaaggttacattcgaacagcgaatcatgtggctgcctgcaactcaatatatagagtatatagagtatagaGCTTTAGTTGTTGTTCTACCTAACATTAGAACGGGCAAGATGtgtaatctaagcaactttgaccgtggtatgattgttgatgccacacatggtggttccagcatctcagaaacagctgccttcctgtgatttttacgcactacagtctctagagtttacagagaatggtacGATAGAAAAAAGAAATTCAGTGAGCGGCATttctgtgggcaaaaacaccttgttaatgagagaggtcagaggagaatgtccagacttATTCAAGCTAACAGGAAGGCCACAAATGCtggtcctacccagtactagataggtgaacctaataaagtggcctgtgagtgtacagtaatgtcaaatctgaaaacatggtctggaaaagtggtacatgggaccatagaaacagtgtctgataaagaatgatgatgaaatattacatccatagataatgtagtccaattggttcatattccacggtaattggtgtcaatggtTCTCGTTATCCTGAATCTTTTATGATCTTAACATGGAATATTGTTTATCAGTTTCCAAAAAACTATGCTttaagagtaatgcaacagttacttatcattttgatCAGTTGTATcaattgtaatgaaatgaatagacaatcatctcagatgtaatgtgtgaattgcattttgaaatggtaatactttgatgttaagttgtgtcattttgaacaggtgattttagttcaatgaacaaatgatcttatctttatgtgtattgtatccaagcaattggaaaaagtgtttgagttttgaaaaatgtgcattttgatcattggttgtgagttttgtgtctagagttttgaaaaattacatcaaggttccgaaatttgtgtgaagaaaaaaaagtgaTTGTAAAACACTGCAAAAACTTACAGTCCCAATCCGATAATGCAGGGATACAAAGTCATCCTTCCTAGTATGGACACAGTAATATCATTTCACTAGGTCACATGATCAGGAAAAACTCTAGAGAGCAGCCATCTGCGATGACAATTGATACAACCTGCCGTGAGAGTTGATTGCGCTCTAGTGGCatttgctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatttcacATGCACTGTCTTTGTAGTAATTTATTAATAGTAGTCCTAAAAAGTGCCATTTGTTGACATTCAACTTGTGTGAATACATTCAGTCAGTTACACATTGAGCATGGTAGAACAAGATCATGTAACCTCTAGAAACAAAACCACCTGTCTTTCTCACTATTGTACTGACCATGAATGATACAGTAGAGCCAGGAGTTTTTCTGTCTGCTTTATCCTGAGCAGGAAACATTCTGGGCCCTGTGTATGAGTTATGTAAAGTTAGTCATGTCAGGAGTTGTTCCTGGAAGTAAACAACTATCTAGATGGCGATCAGGATTTAGGACTATCATCACTTACATTCTGTCACAATGCTAATTATCCGAGCCCTGCGGTAACACACCAGATTAAGCTAATCAGATATGTTAGTGAGCATGTCAGGCCTGGGAGTCTGTTTTGAGCTGCTCCAGCTCGGTGGAGGTACCAGTACCAGTTCCAGTCTTTCTGGTTCCTGGTGTCTGTTTCATTCCCTTTTTAAACACAGCTGCTATCTCCTCAAATGTCTTCCCTTTGGTCTCCGGCACGCGCAGGTAAGTGAACACAGTGAAACCAAACAACAGCACCGCAAACAGGATGAACACATAGCTACCACACAGAGcctggagagaggggtggagagagagagagagagagagagagagaga

Function

NR:

description
PREDICTED: tomoregulin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659300 True 2314 lncRNA 0.41 2 15195668 15198020

Neighbor

gene id symbol gene type direction distance location
LOC110527389 LOC106575481 coding upstream 103783 15087458 ~ 15091885 (+)
LOC110519434 LOC106591654 coding upstream 193110 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 263918 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 268628 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 274627 14914708 ~ 14921041 (+)
trnar-ccu NA coding downstream 130624 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 133074 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 135775 15333795 ~ 15333865 (+)
trnar-ccu-4 NA coding downstream 137141 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 149623 15347643 ~ 15347715 (+)
G578012 NA non-coding upstream 1232 15194126 ~ 15194436 (+)
G578011 NA non-coding upstream 1929 15193201 ~ 15193739 (+)
G578005 NA non-coding upstream 11420 15182161 ~ 15184248 (+)
G577944 NA non-coding upstream 92381 15102750 ~ 15103287 (+)
G577968 LOC106591672 non-coding upstream 95090 15094226 ~ 15100578 (+)
G578016 NA non-coding downstream 235 15198255 ~ 15228068 (+)
G578018 NA non-coding downstream 12546 15210566 ~ 15215409 (+)
G578027 NA non-coding downstream 40103 15238123 ~ 15239924 (+)
G578029 NA non-coding downstream 46071 15244091 ~ 15244636 (+)
G578057 NA non-coding downstream 94548 15292568 ~ 15292954 (+)
G577909 NA other upstream 181133 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 224061 14961205 ~ 14971607 (+)
G577561 NA other upstream 789070 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 964736 14218353 ~ 14230983 (+)
G577261 NA other upstream 1015604 14172523 ~ 14180064 (+)
G578031 NA other downstream 57151 15255171 ~ 15256207 (+)
G578389 NA other downstream 264225 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 294881 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 795638 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 848263 16046065 ~ 16048048 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G81677 NA non-coding CI01000013 null 6028609 ~ 6029518 (+)
bowfin (Amia calva) G74459 NA non-coding CM030128.1 CM030128.1 39601852 ~ 39602098 (+)