G578027


Basic Information

Item Value
gene id G578027
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15238123 ~ 15239924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659319
tacaaaacatagaaaccaAAACATTAGTGATGAGTTTGTCATTCAGAAACAAAGAGGTCTAGAGTTTTTATTTTAAAGAGTCCAAAAGTAGTGATCAGCAGCCTGTTCACCAGATAGAggtgtatcacacacacacacacacacacacacacacacaactctttaTTGCTAACATTCTAAAAAGCAACCTGTCTCCATAACAGTAACTTAAGCAGTAACTTAAGCATGACATTTAAAGGAGCAGTCTGGAAGTTTAATTTCCCGGACAAAAGGGTTTCCCCTGCACTTGTTTGTAATTTGAGGGAGTGGGTCTCGGTGAATGTAATATTTCTTTGATGAATGTGTTTGCAGTCACTAAATATACATACATGACCCACACACGCATACCTCACAGAACTGTTGCATTCTGGGTAATGGAGTTCTACAGCATGGCTTAAAAGCATTAAAGAAAACAGCTTCAGATGTTCTCGTCTTTGTTTTCAgaaatgcaaatgtatttaataaaatgtcaaacattatttaatttttttataaattaagTTTTGTTTAAGATAAAATGATAATGTTCAATCTAAGGACATAAGATGCTATGAAATAGTTAATATAAAATGGTAAACCAACAGAAAGAGTGAACAAAACAACAGTAGATAAATCAGATGGCTTCATCATGCTTGGCACCGTACAAACAGGAAGGAGTCACAATCAGACCAGACCAATCAGGTGGGAGACAGCTTTACACAATAATTctttacacacagagacagataagacagacagacagacacagagtggTTCATTCTCAGACAATTCTCAAATGATTCTCAGTTGAATCAGGTTTTACTCTGGCATTTCAGCATAACATAAAACACACAAACTGAACGGCAGAAACTAGCAGTGTGCTGTGCAAGTTATCAAGTTCTTCACATTACAATTCAAAAGTCATTTTAAAGTACCTAAAGAAACAAGAAACAAAACTTGAACAATGTGTTATTTAAAAGACAGAATGAAAGCATATTTCTAGTAAACAGCAGAATGTTGTTATTCTTGTTTTGTTTTAACAgttaatctgatgcagcaccttGAGAATTGAAAGACTTCAGAGTGGAtagagggacaggaggagaagagggagacagagggacaggaggagaagaggagggagacagaggcgGGGATTTTGTTTTAAAGGGACATAGCCAATATTTTAGAGAAgaggggtggagtggtggagagaaagaaagattagGATCCGGAAGTTCCGGTTCGTCTCCACAGACGGTAGTCGAGATCTTGGAAAACCGGGAAACCAGCGCCCCCTTTATCTAAACACTCCTCTACCTTCAGACTCCTCTTCATAATAGTCATGTAtctctttattatttcattcttTATAGTCCTTTAAGTCTGTTACAGTGTTGTAGTCTCTCAGTGTTTCACTGTCTTCAAGTTTGATTCTCTCAGAGCCTGATTCATTTACACTTCAATTCTTTCACactgatttgatatttgattcCCTCAGCGTTCGATTCATTCAGCGTTTGATTCTCTCAGTTAGATTCAGTGTTGGACTTTCAGGGTTCAGGGTGCGATTTGATTCTCTTGGTCCATTGTTTTAATTGGCGTCTGAAATTAGAGTTGGCCCGTGATCGACAGCTGAGCATTCCAATAGGAAGATGGTGGGAGGAGTTAGTTTCACCAGTTCATCATGGAGCTACGGTTGAGGGTCATGAAGAAGACCTGACTGCTGCCTCCAGACCTCACCGATGCAAA

Function

NR:

description
PREDICTED: TRAF2 and NCK-interacting protein kinase-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659319 True 1770 lncRNA 0.39 2 15238123 15239924

Neighbor

gene id symbol gene type direction distance location
LOC110527389 LOC106575481 coding upstream 146238 15087458 ~ 15091885 (+)
LOC110519434 LOC106591654 coding upstream 235565 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 306373 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 311083 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 317082 14914708 ~ 14921041 (+)
trnar-ccu NA coding downstream 88720 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 91170 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 93871 15333795 ~ 15333865 (+)
trnar-ccu-4 NA coding downstream 95237 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 107719 15347643 ~ 15347715 (+)
G578016 NA non-coding upstream 10055 15198255 ~ 15228068 (+)
G578018 NA non-coding upstream 22714 15210566 ~ 15215409 (+)
G578013 LOC106575464 non-coding upstream 40103 15195668 ~ 15198020 (+)
G578012 NA non-coding upstream 43687 15194126 ~ 15194436 (+)
G578011 NA non-coding upstream 44384 15193201 ~ 15193739 (+)
G578029 NA non-coding downstream 4167 15244091 ~ 15244636 (+)
G578057 NA non-coding downstream 52644 15292568 ~ 15292954 (+)
G578287 NA non-coding downstream 90845 15330769 ~ 15335156 (+)
G578290 NA non-coding downstream 96058 15335982 ~ 15346591 (+)
G578297 NA non-coding downstream 113162 15353086 ~ 15354815 (+)
G577909 NA other upstream 223588 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 266516 14961205 ~ 14971607 (+)
G577561 NA other upstream 831525 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1007191 14218353 ~ 14230983 (+)
G577261 NA other upstream 1058059 14172523 ~ 14180064 (+)
G578031 NA other downstream 15247 15255171 ~ 15256207 (+)
G578389 NA other downstream 222321 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 252977 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 753734 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 806359 16046065 ~ 16048048 (+)

Expression


Co-expression Network