G578287


Basic Information

Item Value
gene id G578287
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15330769 ~ 15335156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659661
tttttacctcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggattgtgagttctagtcttttctgaagtggctgagaccagagtggcgcagcggaagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagattATTTTCAAAAAAGAAACGCAAACAGAAATTAGAAAGCTAAATTTCATTTGCGTGTCTCAGTGCTATCCAGTACACATTGTTTTTactgcttctatcagttcatACTATTTGCAAAAGGTaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659661 True 321 lncRNA 0.42 2 15330769 15335156

Neighbor

gene id symbol gene type direction distance location
trnar-ccu NA coding upstream 2053 15328644 ~ 15328716 (+)
LOC110527389 LOC106575481 coding upstream 238884 15087458 ~ 15091885 (+)
LOC110519434 LOC106591654 coding upstream 328211 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 399019 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 403729 14921809 ~ 14927040 (+)
trnar-ccu-4 NA coding downstream 5 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 12487 15347643 ~ 15347715 (+)
trnar-ccu-6 NA coding downstream 27868 15363024 ~ 15363096 (+)
trnar-ccu-7 NA coding downstream 28681 15363837 ~ 15363909 (+)
trnar-ccu-8 NA coding downstream 85698 15420854 ~ 15420926 (+)
G578057 NA non-coding upstream 37815 15292568 ~ 15292954 (+)
G578029 NA non-coding upstream 86133 15244091 ~ 15244636 (+)
G578027 NA non-coding upstream 90845 15238123 ~ 15239924 (+)
G578016 NA non-coding upstream 102701 15198255 ~ 15228068 (+)
G578018 NA non-coding upstream 115360 15210566 ~ 15215409 (+)
G578290 NA non-coding downstream 826 15335982 ~ 15346591 (+)
G578297 NA non-coding downstream 17930 15353086 ~ 15354815 (+)
G578303 NA non-coding downstream 40547 15375703 ~ 15380028 (+)
G578344 NA non-coding downstream 82641 15417797 ~ 15418683 (+)
G578383 NA non-coding downstream 106259 15441415 ~ 15442577 (+)
G578031 NA other upstream 74562 15255171 ~ 15256207 (+)
G577909 NA other upstream 316234 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 359162 14961205 ~ 14971607 (+)
G577561 NA other upstream 924171 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1099837 14218353 ~ 14230983 (+)
G578389 NA other downstream 127089 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 157745 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 658502 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 711127 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 1122889 16457220 ~ 16463699 (+)

Expression


Co-expression Network