G578290


Basic Information

Item Value
gene id G578290
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15335982 ~ 15346591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659664
acactggactcctaagccatggattgtgagttctagtcttttctgaagtggatggaagcagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacatttttaaaaaatgtgtcatttcatgggcatgtctcagtgccattatatatatttttttacctcttccaacagatcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatagattgtgagttctagccttttctgaagtggatggaagcagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacatttttaaaaaatgtgtcgtttcatggacatgtctcagtgccattatatatatttttttacctcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggattgtgagttctagccttttctgaagtggatggaagcagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacattttttaaaaatgtgtcgtttcatggacatgtctcagtgccattatatatatttttttacctcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659664 True 837 lncRNA 0.44 2 15335982 15346591

Neighbor

gene id symbol gene type direction distance location
trnar-ccu-4 NA coding upstream 749 15335161 ~ 15335233 (+)
trnar-ccu-3 NA coding upstream 2117 15333795 ~ 15333865 (+)
trnar-ccu-2 NA coding upstream 4818 15331094 ~ 15331164 (+)
trnar-ccu NA coding upstream 7266 15328644 ~ 15328716 (+)
LOC110527389 LOC106575481 coding upstream 244097 15087458 ~ 15091885 (+)
trnar-ccu-5 NA coding downstream 1052 15347643 ~ 15347715 (+)
trnar-ccu-6 NA coding downstream 16433 15363024 ~ 15363096 (+)
trnar-ccu-7 NA coding downstream 17246 15363837 ~ 15363909 (+)
trnar-ccu-8 NA coding downstream 74263 15420854 ~ 15420926 (+)
LOC110528890 LOC106591034 coding downstream 81885 15428476 ~ 15438667 (+)
G578287 NA non-coding upstream 826 15330769 ~ 15335156 (+)
G578057 NA non-coding upstream 43028 15292568 ~ 15292954 (+)
G578029 NA non-coding upstream 91346 15244091 ~ 15244636 (+)
G578027 NA non-coding upstream 96058 15238123 ~ 15239924 (+)
G578016 NA non-coding upstream 107914 15198255 ~ 15228068 (+)
G578297 NA non-coding downstream 6495 15353086 ~ 15354815 (+)
G578303 NA non-coding downstream 29112 15375703 ~ 15380028 (+)
G578344 NA non-coding downstream 71206 15417797 ~ 15418683 (+)
G578383 NA non-coding downstream 94824 15441415 ~ 15442577 (+)
G578398 NA non-coding downstream 161580 15508171 ~ 15508444 (+)
G578031 NA other upstream 79775 15255171 ~ 15256207 (+)
G577909 NA other upstream 321447 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 364375 14961205 ~ 14971607 (+)
G577561 NA other upstream 929384 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1105050 14218353 ~ 14230983 (+)
G578389 NA other downstream 115654 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 146310 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 647067 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 699692 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 1111454 16457220 ~ 16463699 (+)

Expression


Co-expression Network