G578297


Basic Information

Item Value
gene id G578297
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15353086 ~ 15354815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659671
gctgggcccataacccagaggtcgatggatcgaaaccatcttctgctaaacagtttattttaagtgcgaacaacattttttttaaatgtgtcgtttcatgggcatgtctcagtgccattatatatttttttttacctcttccaacagatcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggattgtgagttctagtcttttctgaagtggatggaagaagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacatttttaaaaaatttgtcgtttcatgggcatgtctcagtgccattatatatatttttttacctcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggattgtgagttctagccttttctgaagtggatggaagcagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacattttaaaaaaatgtgtcatttcatgggcatgtctcagtgcaattatatatatttttttacctcttccaacagatcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggattgtgagttctagtcttttctgaagtggatggaagcagagtggagcagcgggagtgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacattttaaaaaaatgtgtcatttcatgggcatgtctcagtgccattatatatatttttttacctcttccaacagatcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccatggattgtgagttctagccttttctgaagtggatggaagcagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacattttaaaaaaatgtgtcgtttcatggacatgtctcagtgccattatatatatttttttacctcttccaacggttcgtataggtcatactgtttacacagtatcccagtggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659671 True 1271 lncRNA 0.43 2 15353086 15354815

Neighbor

gene id symbol gene type direction distance location
trnar-ccu-5 NA coding upstream 5371 15347643 ~ 15347715 (+)
trnar-ccu-4 NA coding upstream 17853 15335161 ~ 15335233 (+)
trnar-ccu-3 NA coding upstream 19221 15333795 ~ 15333865 (+)
trnar-ccu-2 NA coding upstream 21922 15331094 ~ 15331164 (+)
trnar-ccu NA coding upstream 24370 15328644 ~ 15328716 (+)
trnar-ccu-6 NA coding downstream 8209 15363024 ~ 15363096 (+)
trnar-ccu-7 NA coding downstream 9022 15363837 ~ 15363909 (+)
trnar-ccu-8 NA coding downstream 66039 15420854 ~ 15420926 (+)
LOC110528890 LOC106591034 coding downstream 73661 15428476 ~ 15438667 (+)
LOC110528896 LOC106595470 coding downstream 102491 15457306 ~ 15472882 (+)
G578290 NA non-coding upstream 6495 15335982 ~ 15346591 (+)
G578287 NA non-coding upstream 17930 15330769 ~ 15335156 (+)
G578057 NA non-coding upstream 60132 15292568 ~ 15292954 (+)
G578029 NA non-coding upstream 108450 15244091 ~ 15244636 (+)
G578027 NA non-coding upstream 113162 15238123 ~ 15239924 (+)
G578303 NA non-coding downstream 20888 15375703 ~ 15380028 (+)
G578344 NA non-coding downstream 62982 15417797 ~ 15418683 (+)
G578383 NA non-coding downstream 86600 15441415 ~ 15442577 (+)
G578398 NA non-coding downstream 153356 15508171 ~ 15508444 (+)
G578404 NA non-coding downstream 169450 15524265 ~ 15524815 (+)
G578031 NA other upstream 96879 15255171 ~ 15256207 (+)
G577909 NA other upstream 338551 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 381479 14961205 ~ 14971607 (+)
G577561 NA other upstream 946488 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1122154 14218353 ~ 14230983 (+)
G578389 NA other downstream 107430 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 138086 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 638843 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 691468 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 1103230 16457220 ~ 16463699 (+)

Expression


Co-expression Network