G578344


Basic Information

Item Value
gene id G578344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15417797 ~ 15418683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659731
tctcagtgccattatatatatttttttacgtcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccagggattgtgggttcaagtcccatctggggtggatggaagcagagtggcgcagcgggagcgtcctgggcccataacccagaggtcgatggattgaaaccatcctctgcaaaacagtttattttaagtgcgaacaacatttttaaaaaatgtgtcgtttcatgggcatgtctcagtgccattatatatatttttttacctcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactgaactcctaagccagggattgtgggttcaagtcccatctggggtggatggaagcagagtggcgcagcgggagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacgttttttttaaatgtgtcgtttcatgggcatgtctcagtgccattatatatatttttttacctcttccaacagttcgtataggtcatactgtttacacagtatcccagtggcctaagacactggactcctaagccagggattgtgagttctagtcttttctgaagtggatggaagcagagtcgcgcagcgggagcgtgctgtgcccataacccagaggtcgatggatcgaaaccatcctctgctaaacagtttattttaagtgcgaacaacattttaaaaaaatgtgtcgtttcatgggcatgtctcagtgccattatatatatttttttacctcttccaacagttcgtataggtcatactgtttacacagtatccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659731 True 887 lncRNA 0.44 1 15417797 15418683

Neighbor

gene id symbol gene type direction distance location
trnar-ccu-7 NA coding upstream 53888 15363837 ~ 15363909 (+)
trnar-ccu-6 NA coding upstream 54701 15363024 ~ 15363096 (+)
trnar-ccu-5 NA coding upstream 70082 15347643 ~ 15347715 (+)
trnar-ccu-4 NA coding upstream 82564 15335161 ~ 15335233 (+)
trnar-ccu-3 NA coding upstream 83932 15333795 ~ 15333865 (+)
trnar-ccu-8 NA coding downstream 2171 15420854 ~ 15420926 (+)
LOC110528890 LOC106591034 coding downstream 9793 15428476 ~ 15438667 (+)
LOC110528896 LOC106595470 coding downstream 38623 15457306 ~ 15472882 (+)
LOC110528871 LOC105019803 coding downstream 59726 15478409 ~ 15489245 (+)
LOC110528902 atr coding downstream 74187 15492870 ~ 15498827 (+)
G578303 NA non-coding upstream 37769 15375703 ~ 15380028 (+)
G578297 NA non-coding upstream 62982 15353086 ~ 15354815 (+)
G578290 NA non-coding upstream 71206 15335982 ~ 15346591 (+)
G578287 NA non-coding upstream 82641 15330769 ~ 15335156 (+)
G578057 NA non-coding upstream 124843 15292568 ~ 15292954 (+)
G578383 NA non-coding downstream 22732 15441415 ~ 15442577 (+)
G578398 NA non-coding downstream 89488 15508171 ~ 15508444 (+)
G578404 NA non-coding downstream 105582 15524265 ~ 15524815 (+)
G578423 NA non-coding downstream 148355 15567038 ~ 15568865 (+)
G578356 LOC106574468 non-coding downstream 160253 15578936 ~ 15582633 (+)
G578031 NA other upstream 161590 15255171 ~ 15256207 (+)
G577909 NA other upstream 403262 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 446190 14961205 ~ 14971607 (+)
G577561 NA other upstream 1011199 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1186865 14218353 ~ 14230983 (+)
G578389 NA other downstream 43562 15462245 ~ 15464365 (+)
LOC110528906 LOC106574480 other downstream 574975 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 627600 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 1039362 16457220 ~ 16463699 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G270856 NA non-coding NC_047611.1 CM018557.1 17087395 ~ 17087922 (+)