G578389


Basic Information

Item Value
gene id G578389
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15462245 ~ 15464365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659798
gatcctcaaaaggttttacagctgcaccatcgagagcactggttgcatcactgtctggtatggcaactgctcggcatccgaccgcaaggcactacagagggtagtacgtacggcccagtacatcaccgggaccaagctttctgccatccaggacctctataccaggcggggtcagaggaagaccctaaaaattgtcaaagactccagccacccaagtcatagactgttctctctgctaccgcacggcaagcggtaccggaccgccaagtctaggtccaagaggctctttaacagcttctacccccaacccATAAGACTGATGAAacgttaatcaaatggccacctggactatttgcattgaccaccttttttacactgctgctaccactgtttattatctatgtatagtcacttcaccccgacctacatgtacatattacctcaattacctcaacgaacctgtttattatctatgtatagtcacttcacccctacctacatgtacatattacctcaattacctcaactaacctgtttattatctatgtatagtcacttcacccctacctacatgtacatattacctcaattacctcaactaacctgtttattatctatgtatagtcacttcacccctacctacatgtacatattacctcaattacctcaactaacctgtttattatctatgtatagtcacttcaccccgacctacatgtacatattacctcaattacctcaactaacctgtttattatctatgtatagtcacttcacccctacctacatgtacatattaccttaattacctcaactaacctgtttattatctatgtatagtcagttcacccctacctacatgtacatattacctcaattacctcaactaacctgtttattatctatgtatagtcagttcacccctacctacatgtacatattacctcaattacctcaactaacctgtttattatctatgtatagtcagttcacccctacctacatgtacatattacctcaattacctcaactaacctgtacattgactcggtacctgcaCCCCCTGTAGAAAGCCCCGctactgttgttttattgtgtaactttttctttctttcctttatttaacaaatattttcttaacctcTTGTCTTAAAATTCATTGTTGGTTAAGCGCTTGTAAGTCCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659798 True 1186 TUCP 0.41 3 15462245 15464365

Neighbor

gene id symbol gene type direction distance location
LOC110528890 LOC106591034 coding upstream 23578 15428476 ~ 15438667 (+)
trnar-ccu-8 NA coding upstream 41319 15420854 ~ 15420926 (+)
trnar-ccu-7 NA coding upstream 98336 15363837 ~ 15363909 (+)
trnar-ccu-6 NA coding upstream 99149 15363024 ~ 15363096 (+)
trnar-ccu-5 NA coding upstream 114530 15347643 ~ 15347715 (+)
LOC110528871 LOC105019803 coding downstream 14044 15478409 ~ 15489245 (+)
LOC110528902 atr coding downstream 28505 15492870 ~ 15498827 (+)
LOC110528777 LOC106575448 coding downstream 35072 15499437 ~ 15505193 (+)
LOC110528898 LOC106574671 coding downstream 49500 15513865 ~ 15515686 (+)
stag1a LOC106575446 coding downstream 66237 15530602 ~ 15575474 (+)
G578383 NA non-coding upstream 19668 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 43562 15417797 ~ 15418683 (+)
G578303 NA non-coding upstream 82217 15375703 ~ 15380028 (+)
G578297 NA non-coding upstream 107430 15353086 ~ 15354815 (+)
G578290 NA non-coding upstream 115654 15335982 ~ 15346591 (+)
G578398 NA non-coding downstream 43806 15508171 ~ 15508444 (+)
G578404 NA non-coding downstream 59900 15524265 ~ 15524815 (+)
G578423 NA non-coding downstream 102673 15567038 ~ 15568865 (+)
G578356 LOC106574468 non-coding downstream 114571 15578936 ~ 15582633 (+)
G578427 NA non-coding downstream 127024 15591389 ~ 15591597 (+)
G578031 NA other upstream 206038 15255171 ~ 15256207 (+)
G577909 NA other upstream 447710 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 490638 14961205 ~ 14971607 (+)
G577561 NA other upstream 1055647 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1231313 14218353 ~ 14230983 (+)
LOC110528906 LOC106574480 other downstream 529293 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 581918 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 993680 16457220 ~ 16463699 (+)
G579566 NA other downstream 1354177 16818542 ~ 16819890 (+)

Expression


Co-expression Network