G578404


Basic Information

Item Value
gene id G578404
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15524265 ~ 15524815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659818
gagagagggagagagagagagagagagagagagagacagagagagagggagagagagagagagagagagagagagagagagagagagagagagagagccttctatgccatcaaaaggaacatacaatttgacataccaattaggatctggctaaaaatacttgaatcagttatagaacccattgccctttatggttgtgaggtctggggtccgctcaccaaccaagaattcacaaaatgggacaaacaccaaattgagactctgcatgcagaattctgcaaaaagaTCCACCGTCTACaaagtaaaacaccaaataatcaAAATTCTCTGTGAGAAGTTGTGAATTTTTCTGAGACTCAGTCTGAGGATGAAGAGCAGAGAGAATGAATTATAGagaagagggaggaatggagagctTCAAACACTTCACACTTGTTTATCCAAAGCCAATGAAATGACAACACACTCCCTATGTAGTGAAGTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659818 True 485 lncRNA 0.42 2 15524265 15524815

Neighbor

gene id symbol gene type direction distance location
LOC110528898 LOC106574671 coding upstream 8579 15513865 ~ 15515686 (+)
LOC110528777 LOC106575448 coding upstream 19072 15499437 ~ 15505193 (+)
LOC110528902 atr coding upstream 25438 15492870 ~ 15498827 (+)
LOC110528871 LOC105019803 coding upstream 35020 15478409 ~ 15489245 (+)
LOC110528896 LOC106595470 coding upstream 51383 15457306 ~ 15472882 (+)
stag1a LOC106575446 coding downstream 5787 15530602 ~ 15575474 (+)
ppp2r3a ppp2r3a coding downstream 81142 15605957 ~ 15647056 (+)
fndc3ba LOC105019796 coding downstream 124731 15649546 ~ 15814242 (+)
LOC110495697 LOC106574566 coding downstream 306995 15831810 ~ 15868293 (+)
LOC110495702 LOC106574475 coding downstream 348331 15873146 ~ 15883313 (+)
G578398 NA non-coding upstream 15821 15508171 ~ 15508444 (+)
G578383 NA non-coding upstream 81688 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 105582 15417797 ~ 15418683 (+)
G578303 NA non-coding upstream 144237 15375703 ~ 15380028 (+)
G578297 NA non-coding upstream 169450 15353086 ~ 15354815 (+)
G578423 NA non-coding downstream 42223 15567038 ~ 15568865 (+)
G578356 LOC106574468 non-coding downstream 54121 15578936 ~ 15582633 (+)
G578427 NA non-coding downstream 66574 15591389 ~ 15591597 (+)
G578429 NA non-coding downstream 73259 15598074 ~ 15598341 (+)
G578430 NA non-coding downstream 74922 15599737 ~ 15599961 (+)
G578389 NA other upstream 59900 15462245 ~ 15464365 (+)
G578031 NA other upstream 268058 15255171 ~ 15256207 (+)
G577909 NA other upstream 509730 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 552658 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 468843 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 521468 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 933230 16457220 ~ 16463699 (+)
G579566 NA other downstream 1293727 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1517594 17042409 ~ 17097924 (+)

Expression


Co-expression Network