XLOC_002518


Basic Information

Item Value
gene id XLOC_002518
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2897979 ~ 2899304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005977
GTCAGCTTTCAGAGCGTTTGATTAGGATTATGTGCTCTTGTCACTTGTTTGACACACATGAGATAGTATGCGATGTTTAGACGTCACAAAGCGACAAATATGCTCACGAATTATACGACATTAATTACAATAGGCGAAAAAAAGTTTCGAACGAACCTGCAAGATATCCGATTGGTAAcgtaaatgaaagtgaaactacGCAGTTGTCCTCCAAATCAATCGCATTTCCTGGTTTGTCAGACGTCTCATTTTGCCCTCATATTATAGTATTATATGCTATAACTGCATGTACACACGATATAGCTTTATATATGTCGAATAACGCTATCTTTGTTAAAATAAACAGCGTTTCAAACGCTGAGGCGAACACTGTttatcatgaatattaattacgtAACGTGCCGTAAGCGAATCACAGCGCGAATATCCGGCTGTTGAATATTAATAAGCTTACGTTTCCTATGAAACGTAATCAAAagtttgttaatattaatgagcTACGCTTTAAAGCTGGGAAAAACAGCGACATCTGTCGCTGCGggtcaaaaaacatttattacaaaatagaTACGTTTCAAAAtcgattatttacattttattggaCGTCTTAGTAACAAAACGAAACGTGATTTTTATTGTGGTTTTAAAATTAGacaaaatcaaaagaaatgaaAGGTACTACATGGGGTTTTCCTCCAACTTACTTTAGTTCAGATCCTGGAAGACAAATAAACATGCTTTTGTTCAGACTATTAGAAAGTATAAATGGTCCCTGAGAAAAAGACAAAATAGTTTTGCTAATTGTATCTAATACAATTATATTCACTGATTGTAAACCTTAATTtcttaaacactttattttaaataataattcattgtCAAAATAGTCTGAAGTGTTTGGGTGGACTCATAATTATTTAATTGCAAGGGAAAATTCTGGCAGTATTTCCAATAAGTGACCTTTCACTAGATCTTAACCATCAGAAATCTAGTTATGTATGTGAATGCTTTATAACAGTAATGCTTCAATGctcagtaacaaaaaaaaaaaaaagataaatacaaaTCAATAAAATCCAATTCatcaaaatgattttaaaagagaTCTGACATTAGCCCACCATTGTAAACTCAcatgtaaaaagaaaagaaaacaataaaaccaattttaaaaaatacaataaatacaagaACATACAATAAAACCATTGTACAGCACTACAAACAGTCATATCCGTTTATGAGTTGACAGTTTCATACAAGGATTACACTTTCATAGCTGCCAGAAatcataacaaaataaaattgaataaaggTTTTACATTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005977 True 1326 lncRNA 0.32 1 2897979 2899304

Neighbor

gene id symbol gene type direction distance location
XLOC_002517 ddx56 coding downstream 22244 2856377 ~ 2875735 (-)
XLOC_002516 ash2l coding downstream 109187 2759226 ~ 2788792 (-)
XLOC_002515 mier3a coding downstream 184739 2695464 ~ 2713240 (-)
XLOC_002514 pdxp coding downstream 215781 2680079 ~ 2682198 (-)
XLOC_002513 CU856539.3 coding downstream 294178 2573161 ~ 2603801 (-)
XLOC_002519 oclna coding upstream 25471 2924775 ~ 2943474 (-)
XLOC_002520 marveld2a coding upstream 44372 2943676 ~ 2971407 (-)
XLOC_002521 ankrd34ba coding upstream 132332 3031636 ~ 3033270 (-)
XLOC_002522 ube2l3a coding upstream 233794 3133098 ~ 3138859 (-)
XLOC_002523 pi4kaa coding upstream 287985 3187289 ~ 3258073 (-)
XLOC_002510 NA non-coding downstream 944520 1948097 ~ 1953459 (-)
XLOC_002506 NA non-coding downstream 1156804 1678283 ~ 1741175 (-)
XLOC_002505 NA non-coding downstream 1179342 1669144 ~ 1718637 (-)
XLOC_002504 NA non-coding downstream 1230349 1666342 ~ 1667630 (-)
XLOC_002502 CABZ01066320.1 non-coding downstream 1345190 1544163 ~ 1552789 (-)
XLOC_002525 NA non-coding upstream 422833 3322137 ~ 3332362 (-)
XLOC_002529 CU571170.1 non-coding upstream 607236 3506540 ~ 3506654 (-)
XLOC_002530 FP236598.1 non-coding upstream 869347 3768651 ~ 3768766 (-)
XLOC_002531 NA non-coding upstream 1054786 3954090 ~ 3956849 (-)
XLOC_002532 NA non-coding upstream 1133174 4032478 ~ 4046317 (-)

Expression


Co-expression Network