XLOC_025180


Basic Information

Item Value
gene id XLOC_025180
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15865921 ~ 15866402 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052333
taAGGTAACAATTTGAGCAGTTGTACTGTATTAACATTCAGTGCAGGTCATGTCACGTGACAACATTGGAGCACACTACCTTTTGAAAAATTCTTATTTATCAAGAAATGATTCTTTTTATCGCCAGCAAAGTGACATTTGTCTATTTGAATAGTGTTTTATTACTGCAAATTGAGTTGTCATTATTCATGCACACCCCTGGTGAAAACAATGATAAAAGAAATGGATGAATGTCacatttaatttgcatacatCCTTTGAAACACCCACACTTCCTGTTTATCTCCAGGATGTAAAAAAAGAGCACCTGGCAGTAATGCACCATATCAAATGACATTAAGCTAGAAAACAGCAGCTGTGGATGTTCTGTTTCCTCTCACCTCGGCTGCGTCCGGCAGGCCGCGGGACTGAAAACAATCGTGGGAGTTGCTGTCTAGTAAACTGGGCCCAAGTAAGGCTGTGCTACTGGATGGGGGCAGGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052333 True 482 lncRNA 0.41 1 15865921 15866402

Neighbor

gene id symbol gene type direction distance location
XLOC_025179 tmem11 coding upstream 29781 15828426 ~ 15836140 (+)
XLOC_025178 natd1 coding upstream 41821 15817644 ~ 15824100 (+)
XLOC_025177 phospho1 coding upstream 54884 15805917 ~ 15811037 (+)
XLOC_025176 BX914211.1 coding upstream 70525 15755723 ~ 15795396 (+)
XLOC_025175 phb coding upstream 118922 15736811 ~ 15746999 (+)
XLOC_025181 jpt2 coding downstream 26637 15893039 ~ 15902229 (+)
XLOC_025182 mapk8ip3 coding downstream 40895 15907297 ~ 15988728 (+)
XLOC_025183 CR387933.1 coding downstream 188607 16055009 ~ 16055732 (+)
XLOC_025184 NA coding downstream 286822 16153224 ~ 16161459 (+)
XLOC_025185 NA coding downstream 320191 16186593 ~ 16241340 (+)
XLOC_025429 BX649540.1 misc downstream 14382337 30248739 ~ 30249036 (+)
XLOC_025174 NA non-coding upstream 146098 15685362 ~ 15719823 (+)
XLOC_025173 NA non-coding upstream 219254 15639452 ~ 15646667 (+)
XLOC_025172 NA non-coding upstream 244167 15618278 ~ 15621754 (+)
XLOC_025170 NA non-coding upstream 348022 15517552 ~ 15517899 (+)
XLOC_025188 CR388224.1 non-coding downstream 506610 16373012 ~ 16373127 (+)
XLOC_025197 BX470185.1 non-coding downstream 1007999 16874401 ~ 16883304 (+)

Expression


Co-expression Network