G578356 (LOC106574468)


Basic Information

Item Value
gene id G578356
gene name LOC106574468
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15578936 ~ 15582633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659763
gcctctgatctggaagactcactaaacactgACGTTTACAAAGAATGAGTTGGTGTGCCCCTGGATATGAAAAAACAAAATGGTGCCATCTAATTTGCAAGTTATACTTTtgatattttagcaattacatttaaaaaaaaaaacacttagacatttactgggtgactttcactttaacttgagtcattttctattaaggcatctttacttttagtCAATTATGACAAGTGGGTACTTCTTCCAGCATTGGTGACTAGGATGAGTGAGGCTGATTATCACACACACATGTTCAAACTGCCATTGGGATATAACATTGTCTCACACGCGGACAAAGAGACATTTTTATTTGACAAACTAGTCTATGGACTCACGGCAGGTGTGTTAATTTAACCAGATAGAAAACAGCTGATTCTTCCAAACAAGTCCCACAGGGTTAGAGACATAAATTGATCTAAGCCaggtctctccaaccctgttcctggtgagctaccctcctggaggtttttgATCCAACCCCTAttgtttatcaaccagctaattactAGAATCAGGTGGCTAGATTGGGGTttgagcgaaaacctacaggacagtatctctccaggagcagggttggagttaacctaGCTCTCCAGGAGCAGGGCTGAAGAGCCCTGATCTAAGCTATAGGTGAAGTGAGAGACAGGTGATGGGCTTGGAGACAGACAGGTCGGGTGGTTGAAGGTGTCTGTTAGAGTGGGATGTTGGCGTGTTTCTTCCAGGGGTTGGTCTGTTTCTTGGAGGCCAGAACCTCCAGATCCCTACAGATCCTCTTCCGGGTGGTCGACGGCACGATGATGTCATCCACGAACCctctgacAGCGGCAGGGAAAGGGTTGGCGAACTTCTCTACGTATTCAGCCTCCTGCTCTGCCTGGTTGGATTTCCCTCTGAAGATGATCTGTACAGCACCcttGGCTCCCATCACGGCCACCTCTGCAGACGGCCAGGCGTAGTTCACATCTCCTCGCAGGTGCTTGGAACTCATGACGTCATACGCTCCTCCGTAGGCCTTCCTAGTGATGATGGTGATCTTGGGGACGGTGGCCTCAGCAAAGGCAAACAGTAGCTTGGCCCCGTGTCGGATGATACCGCCATACTCCTGAGACGTACCTGGCAGGAAGCCGGGCACGTCCACGAAGGTGAGGATGGGGATGTTGAAAGCGTCACAGAAACGAACGAAGCGAGCTCCCTTCACTGATGAGTTAATGTCCAAGCAACCAGACGCTACTTTAGGTTGATTCCCTACAATTCCAACAGTTCGTCCGTTCATGCGAGCGAATCCCACTACGATGTTTTTAGCGTAGTTAGGCATGATCTCAAAGAACTCCCTCTCATCCGTAATcccCTGGATGATGTCCAGCATATCGTAGGCTTTAGTGGTCTCAAAGGGAACAATGGTGTCCAGACCAGGAACCAGTCTatcaCTGGGGTCGTGGCACTCGGTAACAGGGGCGGGGTCCTGGTTGCTAAGAGGAAGGAAGTTGAAGAAGTTTCGGAGGTTGAGCAGAGCATCGATGTCGTTCTCAAACGCACGGTGAGCGACGCCTGACACGGCGGTGTGTGTTTTAGCTCCGCCCAGTTCCTCCTGAGTGACGTCTTCATTGGTGACAGACTTCACTACGTCAGGACCTGTGATGAACAGGTATGAGgtgtcCTTGACCATAAAGGTGAAGTCGGTCAGGGCAGGAGAGTAGACAGCTCCTCCAGCACAGGGACCCATGATCAGAGAGATCTGAGGAACCACACCTGAAGCCATCACATTCCTCAGGAAGATGTCGGCGTATCCAGCCAGTGACTCCACCCCCTCCTGGATCCTGGCTCCGCCAGAGTCGTTTAGACCAATGACTGGAGCACCCACCATCATGGCCTGGTCCATGATCTTACAGATCTTCTGTGCGTGAGCCCCAGACAGACTGCCTCCAAATACTGTGAAGTCctgactgAAGACGTACACCAGCCTTCCGTTGATCCTCCCCTGTCCAGTCACCACACTGTCCCCTGCGaaCTTGTTGTGGTCCTCTTCCATGCCGAAGTCAGAGCAGCGATGTTCCACAAACATGTCACACTCTACAAACGAGTCTTTATCCAACAGGAGCTcaactctctctctggctgtcagCTTCCCCCTTTTGTGTTGCGCGTCAATTCTCTTCTGACCTCCTCCGATCAGCGCAGCattcctctttctgtctatccTCTCCTGAACGGAGAGATGACTAACGGAATACCACCGCCGCGACTGTTGCTGCAGCTCGGACTGTGCAACCGCTGCCGAAGCCGCGCCATGTTTTACCTGTCCGAATGTTTTAAAAGAAGCTTTTAGTCCGGAAAGCAGACCACAGCCTCTCCGTGCTACAGCGAAGGCCGCCATTGCTGTCT

Function

NR:

description
propionyl-CoA carboxylase beta chain, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659763 True 2418 lncRNA 0.50 13 15578936 15582633

Neighbor

gene id symbol gene type direction distance location
stag1a LOC106575446 coding upstream 3462 15530602 ~ 15575474 (+)
LOC110528898 LOC106574671 coding upstream 63250 15513865 ~ 15515686 (+)
LOC110528777 LOC106575448 coding upstream 73743 15499437 ~ 15505193 (+)
LOC110528902 atr coding upstream 80109 15492870 ~ 15498827 (+)
LOC110528871 LOC105019803 coding upstream 89691 15478409 ~ 15489245 (+)
ppp2r3a ppp2r3a coding downstream 23324 15605957 ~ 15647056 (+)
fndc3ba LOC105019796 coding downstream 66913 15649546 ~ 15814242 (+)
LOC110495697 LOC106574566 coding downstream 249177 15831810 ~ 15868293 (+)
LOC110495702 LOC106574475 coding downstream 290513 15873146 ~ 15883313 (+)
LOC110528900 NA coding downstream 327157 15903494 ~ 15927285 (+)
G578423 NA non-coding upstream 10071 15567038 ~ 15568865 (+)
G578404 NA non-coding upstream 54121 15524265 ~ 15524815 (+)
G578398 NA non-coding upstream 70492 15508171 ~ 15508444 (+)
G578383 NA non-coding upstream 136359 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 160253 15417797 ~ 15418683 (+)
G578427 NA non-coding downstream 8756 15591389 ~ 15591597 (+)
G578429 NA non-coding downstream 15441 15598074 ~ 15598341 (+)
G578430 NA non-coding downstream 17104 15599737 ~ 15599961 (+)
G578431 NA non-coding downstream 21000 15603633 ~ 15603910 (+)
G578389 NA other upstream 114571 15462245 ~ 15464365 (+)
G578031 NA other upstream 322729 15255171 ~ 15256207 (+)
G577909 NA other upstream 564401 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 607329 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 411025 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 463650 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 875412 16457220 ~ 16463699 (+)
G579566 NA other downstream 1235909 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1459776 17042409 ~ 17097924 (+)

Expression


Co-expression Network