G578431


Basic Information

Item Value
gene id G578431
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15603633 ~ 15603910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU659845
CTTCTGGGCACGATgactgtcttccactcatcccctcccttgatacgcaccaggttgtaagcactcCCGAGGTCCAATCTTGTGAAGAAGCGCACAATGACTGTCATACTGGctatgagaggtagtgggtaactgtaTTTTTATCGTGATCTGATTCAAACCTCAATCAATACACAGGCGCAAACCTCCAtccttcacaaaaaagaaactcgaggagacaggtgaaatggaaggccgaatgtatccctgtcccagagattcagtgacatatgtttcca

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU659845 True 278 lncRNA 0.47 1 15603633 15603910

Neighbor

gene id symbol gene type direction distance location
stag1a LOC106575446 coding upstream 28159 15530602 ~ 15575474 (+)
LOC110528898 LOC106574671 coding upstream 87947 15513865 ~ 15515686 (+)
LOC110528777 LOC106575448 coding upstream 98440 15499437 ~ 15505193 (+)
LOC110528902 atr coding upstream 104806 15492870 ~ 15498827 (+)
LOC110528871 LOC105019803 coding upstream 114388 15478409 ~ 15489245 (+)
ppp2r3a ppp2r3a coding downstream 2047 15605957 ~ 15647056 (+)
fndc3ba LOC105019796 coding downstream 45636 15649546 ~ 15814242 (+)
LOC110495697 LOC106574566 coding downstream 227900 15831810 ~ 15868293 (+)
LOC110495702 LOC106574475 coding downstream 269236 15873146 ~ 15883313 (+)
LOC110528900 NA coding downstream 305880 15903494 ~ 15927285 (+)
G578430 NA non-coding upstream 3672 15599737 ~ 15599961 (+)
G578429 NA non-coding upstream 5292 15598074 ~ 15598341 (+)
G578427 NA non-coding upstream 12036 15591389 ~ 15591597 (+)
G578356 LOC106574468 non-coding upstream 21000 15578936 ~ 15582633 (+)
G578423 NA non-coding upstream 34768 15567038 ~ 15568865 (+)
G578462 NA non-coding downstream 134484 15738394 ~ 15741466 (+)
G578463 NA non-coding downstream 135268 15739178 ~ 15741167 (+)
G578464 NA non-coding downstream 137648 15741558 ~ 15741815 (+)
G578465 NA non-coding downstream 142304 15746214 ~ 15791344 (+)
G578389 NA other upstream 139268 15462245 ~ 15464365 (+)
G578031 NA other upstream 347426 15255171 ~ 15256207 (+)
G577909 NA other upstream 589098 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 632026 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 389748 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 442373 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 854135 16457220 ~ 16463699 (+)
G579566 NA other downstream 1214632 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1438499 17042409 ~ 17097924 (+)

Expression


Co-expression Network