XLOC_025183 (CR387933.1)


Basic Information

Item Value
gene id XLOC_025183
gene name CR387933.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16055009 ~ 16055732 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049732
CGTCATGTGCCGTGATGGAAACCTTCGCATCCCATCTTCTCGTCCTACAAAAGGGGTTAAACGACGCGTTTCTTACCGCTGAACACCATCGCTGAGGAGGCACCCATCACTGCGAAGAAGGGAGAGTACTGGGGGTTCTGGGTGTCCATTCTTCTCGCGCGTTCGGGAGACTAAAACTAAAGGCAGAAAAGGGAGGAAAGCTTCAGTCTAGCAGGTTTAGACTCTGAGTGAGGTCTTCTTTTGGCTGACAGGTCTTGCAGGAGCAGGAGAGACGGTCACGAACCCGACAGGAGGCTGGTCGCCGGCGGAGAGGAAGAAAATGGCGAAATGAAGAGAGTCACATGATCAAGACATGAGTGCAGGGTCCATTTCCGCTTCTGCGGGGATGACTTATGAGTGCGCAAGATATTTCTTTTTAGGATTGTGCAATGACTGACTGTCACGGGATCGCATGGATGATTTTTTATAGCGTTTTAGTAGAATTGCATGAACGTAAATAGTTTTGTTCGAGCATTCGATGGTTTTGTCGTTTTACAGACACCCCTATTTTGTAAGCATTTTTGGTACGTTCCATTGCAGGCTTCCACTATGTTGTGTGAACGATCTACAGGCTATCCAAGATCATTGGAAGAATATTGTATTGGAAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049732 True 648 lncRNA 0.47 2 16055009 16055732

Neighbor

gene id symbol gene type direction distance location
XLOC_025182 mapk8ip3 coding upstream 66281 15907297 ~ 15988728 (+)
XLOC_025181 jpt2 coding upstream 152780 15893039 ~ 15902229 (+)
XLOC_025180 NA coding upstream 188607 15865921 ~ 15866402 (+)
XLOC_025179 tmem11 coding upstream 218869 15828426 ~ 15836140 (+)
XLOC_025178 natd1 coding upstream 230909 15817644 ~ 15824100 (+)
XLOC_025184 NA coding downstream 97492 16153224 ~ 16161459 (+)
XLOC_025185 NA coding downstream 130861 16186593 ~ 16241340 (+)
XLOC_025186 rpl19 coding downstream 174179 16229911 ~ 16232442 (+)
XLOC_025187 st8sia6 coding downstream 210192 16265924 ~ 16285259 (+)
XLOC_025188 CR388224.1 coding downstream 317280 16373012 ~ 16373127 (+)
XLOC_025429 BX649540.1 misc downstream 14193007 30248739 ~ 30249036 (+)
XLOC_025176 BX914211.1 non-coding upstream 259613 15755723 ~ 15795396 (+)
XLOC_025174 NA non-coding upstream 335186 15685362 ~ 15719823 (+)
XLOC_025173 NA non-coding upstream 408342 15639452 ~ 15646667 (+)
XLOC_025172 NA non-coding upstream 433255 15618278 ~ 15621754 (+)
XLOC_025197 BX470185.1 non-coding downstream 818669 16874401 ~ 16883304 (+)
XLOC_025203 CU207238.1 non-coding downstream 1339507 17395239 ~ 17461885 (+)

Expression


Co-expression Network