G578755


Basic Information

Item Value
gene id G578755
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15895436 ~ 15895784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU660235
ttcagaccctttgctatgagactctaaattgagctcaggtgcatcctgtttccattgatcattcttgagatgtttctacaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaatgcacacacctgtctatataaagtcccacagttgacagtgcatgccagagtgaaaaccaagccatgaggtcgaaggaattgtccgtagagcttcaagaggattgtgtcgaggcacagatctggggaagggtaccaaaacatttctgcaacattgaaggtccccaagcacACAGTGggctccataattcttaaatggaagaagtttggaaccacca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU660235 True 349 lncRNA 0.44 1 15895436 15895784

Neighbor

gene id symbol gene type direction distance location
LOC110495702 LOC106574475 coding upstream 12123 15873146 ~ 15883313 (+)
LOC110495697 LOC106574566 coding upstream 27143 15831810 ~ 15868293 (+)
fndc3ba LOC105019796 coding upstream 81194 15649546 ~ 15814242 (+)
ppp2r3a ppp2r3a coding upstream 248380 15605957 ~ 15647056 (+)
stag1a LOC106575446 coding upstream 319962 15530602 ~ 15575474 (+)
LOC110528900 NA coding downstream 14006 15903494 ~ 15927285 (+)
LOC110528779 NA coding downstream 37642 15933426 ~ 15935198 (+)
LOC110518760 NA coding downstream 46341 15942125 ~ 15943670 (+)
LOC110495721 NA coding downstream 57511 15949966 ~ 15955119 (+)
LOC118965263 NA coding downstream 73674 15969458 ~ 15971366 (+)
G578496 NA non-coding upstream 34947 15847040 ~ 15860489 (+)
G578351 NA non-coding upstream 75950 15816586 ~ 15819486 (+)
G578479 NA non-coding upstream 104019 15789314 ~ 15791417 (+)
G578465 NA non-coding upstream 104092 15746214 ~ 15791344 (+)
G578470 NA non-coding upstream 129892 15765064 ~ 15765544 (+)
G578761 NA non-coding downstream 13119 15908903 ~ 15933022 (+)
G578770 NA non-coding downstream 21497 15917281 ~ 15918738 (+)
G578766 NA non-coding downstream 30432 15926216 ~ 15963543 (+)
LOC110528902 atr other upstream 396850 15492870 ~ 15498827 (+)
G578389 NA other upstream 431071 15462245 ~ 15464365 (+)
G578031 NA other upstream 639229 15255171 ~ 15256207 (+)
G577909 NA other upstream 880901 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 923829 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 97874 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 150499 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 562261 16457220 ~ 16463699 (+)
G579566 NA other downstream 922758 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1146625 17042409 ~ 17097924 (+)

Expression


Co-expression Network