G578761


Basic Information

Item Value
gene id G578761
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15908903 ~ 15933022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU660242
GGAAGAGTTATGATACTAGTTTGTAACCATTGTTTCTGTGAGTTAGTAAAGTGTTTATACTTGGTGATGTCATATAACAAGACCCTTAGTTCTGTGTTCAGTGGATCAGTGATGTGTGTCATTTTGTACAGGAGGTTTTTGTACGACTCTAAATCACTGTGTAAACACATTGTTACTATTGAGATAGTGGTAACTCTGACAGTAGTAAATGGctgcatcttcagcctggactccactgatggtcagagtgaagtcCCTCTCAGACCCACTGCCACTGAATCTAGCAGGAATCCCATCTAACCGTTTCTTTGCATATCTTATCAGGAGTTTGGGAGCTTCTCCAGGTCTCTGTTGATACCAGAACACACCCTCATCTCCATCACTGTCTGTGTACACTTTAGGGTTGGTTGTACAGGTCAGAGTGACGGGGTCTCCTGGAGAAAATGTCACTACAGGAGGCTGAGTCACAGTCACCTGACCTCTGGATCCTgaagaagaaaaatataaattGATCAATGAGTATGAATAAGATATGACTTATATTTAATTATATTTTATGAAGGTACATTTATTCATTGAGATCCATTTCAATGATTATACAAGGTACTCAACATGTATTTTTCCATTGTAAGAGTTATAAAACAACAGACCTTTGAGACAGC

Function

NR:

description
Ig kappa chain V-III region ABPC 22/PC 9245

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU660242 True 662 lncRNA 0.39 3 15908903 15933022

Neighbor

gene id symbol gene type direction distance location
LOC110495702 LOC106574475 coding upstream 25590 15873146 ~ 15883313 (+)
LOC110495697 LOC106574566 coding upstream 40610 15831810 ~ 15868293 (+)
fndc3ba LOC105019796 coding upstream 94661 15649546 ~ 15814242 (+)
ppp2r3a ppp2r3a coding upstream 261847 15605957 ~ 15647056 (+)
stag1a LOC106575446 coding upstream 333429 15530602 ~ 15575474 (+)
LOC110528779 NA coding downstream 404 15933426 ~ 15935198 (+)
LOC110518760 NA coding downstream 9103 15942125 ~ 15943670 (+)
LOC110495721 NA coding downstream 20273 15949966 ~ 15955119 (+)
LOC118965263 NA coding downstream 36436 15969458 ~ 15971366 (+)
LOC110528907 LOC106575427 coding downstream 51618 15984640 ~ 15989128 (+)
G578755 NA non-coding upstream 13119 15895436 ~ 15895784 (+)
G578496 NA non-coding upstream 48414 15847040 ~ 15860489 (+)
G578351 NA non-coding upstream 89417 15816586 ~ 15819486 (+)
G578479 NA non-coding upstream 117486 15789314 ~ 15791417 (+)
G578470 NA non-coding upstream 143359 15765064 ~ 15765544 (+)
G578786 NA non-coding downstream 3914 15936936 ~ 15937968 (+)
G578788 NA non-coding downstream 17285 15950307 ~ 15954402 (+)
G578793 NA non-coding downstream 40972 15973994 ~ 16030905 (+)
LOC110528902 atr other upstream 410317 15492870 ~ 15498827 (+)
G578389 NA other upstream 444538 15462245 ~ 15464365 (+)
G578031 NA other upstream 652696 15255171 ~ 15256207 (+)
G577909 NA other upstream 894368 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 937296 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 60636 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 113261 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 525023 16457220 ~ 16463699 (+)
G579566 NA other downstream 885520 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1109387 17042409 ~ 17097924 (+)

Expression


Co-expression Network