XLOC_025186 (rpl19)


Basic Information

Item Value
gene id XLOC_025186
gene name rpl19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16229911 ~ 16232442 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049733
CAGTCCTGAAATCTTCCTCATTGACAGCGGCTGCTGCTTTCCGCTGACCACCAGCCATGAGtatGCTCAGACTTCAGAAGAGGCTGGCCTCCAGCGTCTTGCGCTGTGGCAAGAAGAAAGTGTGGCTGGACCCAAACGAAACCAACGAAATTGCCAATGCAAACTCCCGCCAACAAATTCGTAAGTTGGTGAAGGATGGTTTGATCATCAAGAAGCCCGTCACGGTTCACTCCCGTGCTCGATGCCGCAAGAATACTCTTGCACGAAGGAAGGGTCGTCACATGGGCGTTGgTAAGAGAAAGGGTACCGCAAACGCACGTATGCCCGAGAAGTTGTGCTGGATGAGACGCATGCGTATCCTGCGTCGACTTCTGAGACGTTACAGAGAGGCCAAGAAGATCGACAGGCACATGTACCACAGCCTGTATCTGAGGGCAAAGGGTAACGTGTTCAAGAACAAGCGCATCCTGATGGAGCACATACACAAGCTCAAAGCAGACAAGGCCCGCAAGAAGCTCTTGGCTGATCAGGCTGAAGCTCGTCGTACAAAGACCCGTGAGGCCCGTAAGCGTCGCGAGGAGAGACAGCAGGCTAAGAAAGAGGAGATCATTAAAACTCTTTCCAAAGAGGATGAGACCAAGAAATAAGTTTGTCTTTCTGCTGTCCCCTATGTGTTGTTTAATTCACTTAAGTGATGAAAATAAACACTGTTTGTTACAGCT
>TCONS_00049734
CTCATTGACAGCGGCTGCTGCTTTCCGCTGACCACCAGCCATGAGtatGCTCAGACTTCAGAAGAGGCTGGCCTCCAGCGTCTTGCGCTGTGGCAAGAAGAAAGTGTGGCTGGACCCAAACGAAACCAACGAAATTGCCAATGCAAACTCCCGCCAACAAATTCGTAAGTTGGTGAAGGATGGTTTGATCATCAAGAAGCCCGTCACGGTTCACTCCCGTGCTCGATGCCGCAAGAATACTCTTGCACGAAGGAAGGGTCGTCACATGGGCGTTGgTAAGAGAAAGGGTACCGCAAACGCACGTATGCCCGAGAAGTTGTGCTGGATGAGACGCATGCGTATCCTGCGTCGACTTCTGAGACGTTACAGAGAGGCCAAGAAGATCGACAGGCACATGTGAGCCCATGtttaatgctcattttaattCCACAGATTGTAACCCAGATGTTTGTACTTCATAAAATATTGTGCAATAAGTTGCTGGTGTTTTAGTCTAACTACATTTttgtgatctctctctctctctctctctctttttatttttttttaaatttattattattattttttatttcataaatgtagCATACACAAGGATAGGCACCTAATGCAGGGATCCACAaataaaaatgtctgtttttttccccAGGTACCACAGCCTGTATCTGAGGGCAAAGGGTAACGTGTTCAAGAACAAGCGCATCCTGATGGAGCACATACACAAGCTCAAAGCAGACAAGGCCCGCAAGAAGCTCTTGGCTGATCAGGCTGAAGCTCGTCGTACAAAGACCCGTGAGGC

Function

symbol description
rpl19 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within hemopoiesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL19 (ribosomal protein L19).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-2290 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within hemopoiesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL19 (ribosomal protein L19).

Ensembl:

ensembl_id ENSDARG00000013307

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049733 False 722 mRNA 0.50 6 16229911 16232442
TCONS_00049734 True 799 lncRNA 0.46 5 16229927 16232282

Neighbor

gene id symbol gene type direction distance location
XLOC_025184 NA coding upstream 68452 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 coding upstream 174179 16055009 ~ 16055732 (+)
XLOC_025182 mapk8ip3 coding upstream 241183 15907297 ~ 15988728 (+)
XLOC_025181 jpt2 coding upstream 327682 15893039 ~ 15902229 (+)
XLOC_025180 NA coding upstream 363509 15865921 ~ 15866402 (+)
XLOC_025187 st8sia6 coding downstream 33482 16265924 ~ 16285259 (+)
XLOC_025188 CR388224.1 coding downstream 140570 16373012 ~ 16373127 (+)
XLOC_025189 kcnj12b coding downstream 217048 16449490 ~ 16458018 (+)
XLOC_025190 slc6a16a coding downstream 333919 16566361 ~ 16591648 (+)
XLOC_025191 slc17a7a coding downstream 380132 16612574 ~ 16654088 (+)
XLOC_025429 BX649540.1 misc downstream 14016297 30248739 ~ 30249036 (+)
XLOC_025176 BX914211.1 non-coding upstream 434515 15755723 ~ 15795396 (+)
XLOC_025174 NA non-coding upstream 510088 15685362 ~ 15719823 (+)
XLOC_025197 BX470185.1 non-coding downstream 641959 16874401 ~ 16883304 (+)
XLOC_025203 CU207238.1 non-coding downstream 1162797 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1808171 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1957167 18189609 ~ 18197126 (+)

Expression


Co-expression Network