G578870



Basic Information


Item Value
gene id G578870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16136775 ~ 16137009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU660391
cgaggtattgctcacctgaggtagaggacctcatgataagctgtagaccacaaactctcttggtagatactATCTATATTTTTCTTAGCCGTCTATTtaacaccacaaaccgatgctggcccTGAGACCACACTCTACGAGCTGTATAAGGCAGTCTTGAAGAGGGCGcgacaacacctttccccctcaggagactgaaaagatttggcatgggtccctagatcctcaaaaagtt

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU660391 True 235 lncRNA 0.47 1 16136775 16137009

Neighbor


gene id symbol gene type direction distance location
LOC110528868 prdm9 coding upstream 38957 16078839 ~ 16097818 (+)
LOC110528915 LOC106574584 coding upstream 88727 16046065 ~ 16048048 (+)
LOC110528881 LOC106575246 coding upstream 102273 16026218 ~ 16034502 (+)
LOC118936678 NA coding upstream 113049 16017180 ~ 16025072 (+)
LOC110528906 LOC106574480 coding upstream 132110 15993464 ~ 16004993 (+)
LOC110528882 LOC106574488 coding downstream 24684 16161693 ~ 16177026 (+)
LOC110528873 ino1a coding downstream 65180 16202189 ~ 16210165 (+)
LOC110528895 LOC106574495 coding downstream 92795 16229804 ~ 16268664 (+)
LOC110528905 LOC106574496 coding downstream 132191 16269200 ~ 16279190 (+)
LOC110528903 LOC106574506 coding downstream 207749 16344292 ~ 16356805 (+)
G578868 NA non-coding upstream 1095 16135380 ~ 16135680 (+)
G578867 NA non-coding upstream 1451 16135029 ~ 16135324 (+)
G578865 NA non-coding upstream 2390 16134041 ~ 16134385 (+)
G578860 NA non-coding upstream 5508 16130941 ~ 16131267 (+)
G578859 NA non-coding upstream 9467 16127047 ~ 16127308 (+)
G578873 NA non-coding downstream 10738 16147747 ~ 16148063 (+)
G578876 NA non-coding downstream 14427 16151436 ~ 16151655 (+)
G578877 NA non-coding downstream 15010 16152019 ~ 16152232 (+)
G578863 NA non-coding downstream 17272 16154281 ~ 16181832 (+)
G578890 NA non-coding downstream 61937 16198946 ~ 16199253 (+)
LOC110528902 atr other upstream 638189 15492870 ~ 15498827 (+)
G578389 NA other upstream 672410 15462245 ~ 15464365 (+)
G578031 NA other upstream 880568 15255171 ~ 15256207 (+)
LOC110528786 omp-1 other downstream 321036 16457220 ~ 16463699 (+)
G579566 NA other downstream 681533 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 905400 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 1196715 17333699 ~ 17336419 (+)
G580179 NA other downstream 1261784 17398793 ~ 17400533 (+)

Expression



Co-expression Network