Fish Transcriptome and Expression Database

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model fish

XLOC_025188 (CR388224.1)

Basic Information

Item	Value
gene id	XLOC_025188
gene name	CR388224.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	16373012 ~ 16373127 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049736
GCCACAGCACACATTACCCTGCAgaccaagaccggttactcactgaatcTAAGCAGGGTTGAGCCTAGTCATTACCTGGAtgtgagaccacatgggaaaactaggttgctgttgga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107309

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00049736	True	116	rRNA	0.50	1	16373012	16373127

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025187	st8sia6	coding	upstream	87753	16265924 ~ 16285259 (+)
XLOC_025185	NA	coding	upstream	131672	16186593 ~ 16241340 (+)
XLOC_025186	rpl19	coding	upstream	140570	16229911 ~ 16232442 (+)
XLOC_025184	NA	coding	upstream	211553	16153224 ~ 16161459 (+)
XLOC_025183	CR387933.1	coding	upstream	317280	16055009 ~ 16055732 (+)
XLOC_025189	kcnj12b	coding	downstream	76363	16449490 ~ 16458018 (+)
XLOC_025190	slc6a16a	coding	downstream	193234	16566361 ~ 16591648 (+)
XLOC_025191	slc17a7a	coding	downstream	239447	16612574 ~ 16654088 (+)
XLOC_025192	zgc:55558	coding	downstream	289082	16662209 ~ 16683623 (+)
XLOC_025193	gys1	coding	downstream	348887	16722014 ~ 16750036 (+)
XLOC_025429	BX649540.1	misc	downstream	13875612	30248739 ~ 30249036 (+)
XLOC_025180	NA	non-coding	upstream	506610	15865921 ~ 15866402 (+)
XLOC_025176	BX914211.1	non-coding	upstream	577616	15755723 ~ 15795396 (+)
XLOC_025197	BX470185.1	non-coding	downstream	501274	16874401 ~ 16883304 (+)
XLOC_025203	CU207238.1	non-coding	downstream	1022112	17395239 ~ 17461885 (+)
XLOC_025215	NA	non-coding	downstream	1667486	18040613 ~ 18061783 (+)
XLOC_025218	NA	non-coding	downstream	1816482	18189609 ~ 18197126 (+)
XLOC_025227	NA	non-coding	downstream	2297697	18670824 ~ 18672291 (+)

Expression

Co-expression Network