G578863


Basic Information

Item Value
gene id G578863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16154281 ~ 16181832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU660384
TGCACGCATACACTTTTAATGACAGTGAAGTGCTGAAAAGACATTTCATATTCATTCCTTTATGTAACTTTTAATGGCAGTGGTgttaagtacttaagtaaaaatatgttaaagtactacttaagtcgtttttttgggtatctgtactttactttactatttatatttttgactactttttcttttacttcaccacattcctaaagaaaattatgtactttttactccatacattttccctgacacccaaaagtactcgttacattttgaatgcttagcagaacagaaaatggtccaagttcatccctactgcctctgatctgatggactcactaaacacaaatgtgtagtcacaagcttgatgtagtcattgtgtgatatgaatatgggaccaaatacttcttactactttaatacacaagtgaatttgtatgaaatacttttggtcccctaaaatgggaggACTACGTACAGAAAATGCTTTAATTTCTAAACaattcacccgatatggatgaaaataccctcaaccTAAAGCTGACACTGCACTTTAACCTAAAGGTAATCTGATCCTGGATATGTGGTTAGGGGCAACTTCTACCTTGAGCCTAATGTAAAGTAATCACATGAATATATATTATCAAAAATGGCAATTAGTCTGACAAATGCCTCGTCTCCTCTACTTCTAACAAGACCAGGTGTGTGTTCAACAAGTAGGGCCAGGAAGATACCAGTATCATTAATAACGTGGCAAGAAACAAAAAGCTCATTTTAcatctttaggaaaacagccctactGTTAGAAACTAATATCATTATCTTGTTACATGTATTTAATTTCTAAGATAGAGCACagaatattttacatacagcaagTTTTTATAGGACCAaagaaaaattgaaaaaaatattgTCATACTGTTATCGTCACAGCCTGATCAACAACTGACTGTCCCAAAACTTTAAAATGCTGATTCACACAATTAAACAGTAGCTAGGGATAACAAAAAAAAGCTATCACATATGCTGAAGTTCTTCAGCTAGCTTTTGGCCATTAAAACAttcactaacgttagctaacagttTAAAAGCTGACGTATTTCACTGCTAACATCAGCCTTTTTGAACGCACCTCAAGGGTATAAATTAAAACTGTCTGGTCAAAATCAAGCCTCTATTGTACATTTAAATCTGGTAGAAGGTGCTCTCCGATCATATGCCATTTTTAATGTTGCTTCGTTGGAAGATTGGATGGCCTCTCCAAGG

Function

NR:

description
hypothetical protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU660384 True 1263 lncRNA 0.35 2 16154281 16181832

Neighbor

gene id symbol gene type direction distance location
LOC110528863 LOC106575439 coding upstream 12090 16124275 ~ 16142191 (+)
LOC110528868 prdm9 coding upstream 56463 16078839 ~ 16097818 (+)
LOC110528915 LOC106574584 coding upstream 106233 16046065 ~ 16048048 (+)
LOC110528881 LOC106575246 coding upstream 119779 16026218 ~ 16034502 (+)
LOC118936678 NA coding upstream 130555 16017180 ~ 16025072 (+)
LOC110528873 ino1a coding downstream 20357 16202189 ~ 16210165 (+)
LOC110528895 LOC106574495 coding downstream 47972 16229804 ~ 16268664 (+)
LOC110528905 LOC106574496 coding downstream 87368 16269200 ~ 16279190 (+)
LOC110528903 LOC106574506 coding downstream 162926 16344292 ~ 16356805 (+)
LOC110528784 LOC106574508 coding downstream 196524 16378356 ~ 16397842 (+)
G578877 NA non-coding upstream 2049 16152019 ~ 16152232 (+)
G578876 NA non-coding upstream 2626 16151436 ~ 16151655 (+)
G578873 NA non-coding upstream 6218 16147747 ~ 16148063 (+)
G578870 NA non-coding upstream 17272 16136775 ~ 16137009 (+)
G578868 NA non-coding upstream 18601 16135380 ~ 16135680 (+)
G578890 NA non-coding downstream 17114 16198946 ~ 16199253 (+)
G578893 NA non-coding downstream 19680 16201512 ~ 16201797 (+)
G578821 NA non-coding downstream 29777 16211609 ~ 16212000 (+)
G578903 NA non-coding downstream 45041 16226873 ~ 16227091 (+)
G578904 NA non-coding downstream 46217 16228049 ~ 16228313 (+)
LOC110528906 LOC106574480 other upstream 149288 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 655695 15492870 ~ 15498827 (+)
G578389 NA other upstream 689916 15462245 ~ 15464365 (+)
G578031 NA other upstream 898074 15255171 ~ 15256207 (+)
LOC110528786 omp-1 other downstream 276213 16457220 ~ 16463699 (+)
G579566 NA other downstream 636710 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 860577 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 1151892 17333699 ~ 17336419 (+)
G580179 NA other downstream 1216961 17398793 ~ 17400533 (+)

Expression


Co-expression Network