G578890


Basic Information

Item Value
gene id G578890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16198946 ~ 16199253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU660411
GTTtactcaagtttgccaaaaaagcacctggaagcacctggatgatcatcaagacgcttggaagaatgttctatggacagatgattcaaaagtataactttttggatgacatgggtcccattattcctggcgaaaaccaaacactgcgtAGCTCTTTATGAACTTTTGAAgcaatccaaacatgacaatTTAATTCACACAGTAACATTAATTTCGTCGATTTCACGTTTTCATCTGTCTTCACACCTCACAGGGGTCTGTGAGAACGTCCCTCCCTGTAGAAGGACACCGACAAGGTGTGTTTGACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU660411 True 308 lncRNA 0.42 1 16198946 16199253

Neighbor

gene id symbol gene type direction distance location
LOC110528882 LOC106574488 coding upstream 21920 16161693 ~ 16177026 (+)
LOC110528863 LOC106575439 coding upstream 56755 16124275 ~ 16142191 (+)
LOC110528868 prdm9 coding upstream 101128 16078839 ~ 16097818 (+)
LOC110528915 LOC106574584 coding upstream 150898 16046065 ~ 16048048 (+)
LOC110528881 LOC106575246 coding upstream 164444 16026218 ~ 16034502 (+)
LOC110528873 ino1a coding downstream 2936 16202189 ~ 16210165 (+)
LOC110528895 LOC106574495 coding downstream 30551 16229804 ~ 16268664 (+)
LOC110528905 LOC106574496 coding downstream 69947 16269200 ~ 16279190 (+)
LOC110528903 LOC106574506 coding downstream 145505 16344292 ~ 16356805 (+)
LOC110528784 LOC106574508 coding downstream 179103 16378356 ~ 16397842 (+)
G578863 NA non-coding upstream 17114 16154281 ~ 16181832 (+)
G578877 NA non-coding upstream 46714 16152019 ~ 16152232 (+)
G578876 NA non-coding upstream 47291 16151436 ~ 16151655 (+)
G578873 NA non-coding upstream 50883 16147747 ~ 16148063 (+)
G578870 NA non-coding upstream 61937 16136775 ~ 16137009 (+)
G578893 NA non-coding downstream 2259 16201512 ~ 16201797 (+)
G578821 NA non-coding downstream 12356 16211609 ~ 16212000 (+)
G578903 NA non-coding downstream 27620 16226873 ~ 16227091 (+)
G578904 NA non-coding downstream 28796 16228049 ~ 16228313 (+)
G578905 NA non-coding downstream 29371 16228624 ~ 16228837 (+)
LOC110528906 LOC106574480 other upstream 193953 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 700360 15492870 ~ 15498827 (+)
G578389 NA other upstream 734581 15462245 ~ 15464365 (+)
G578031 NA other upstream 942739 15255171 ~ 15256207 (+)
LOC110528786 omp-1 other downstream 258792 16457220 ~ 16463699 (+)
G579566 NA other downstream 619289 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 843156 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 1134471 17333699 ~ 17336419 (+)
G580179 NA other downstream 1199540 17398793 ~ 17400533 (+)

Expression


Co-expression Network