XLOC_025189 (kcnj12b)


Basic Information

Item Value
gene id XLOC_025189
gene name kcnj12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16449490 ~ 16458018 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049737
AAGGGTGAGAgagagtcagagagagagagagagagaagagagagcagTGTTTTAAATGTTCAAAGAGAGAATCGTTTGCGAGGTGTTGCACGGAAACATTAGGAAATCTTAGCCATGCATGCATAAGCCTCAGGATGACCACGACTGAGCTGAAGATCTCTGGAACCTGTTAGCACACAGATAAGACCCTCCTTCCAATATATGCGTACATGTGCGCGACTTtccatctctgtgtgtgtgacgCTAAAGATGAGGACCTCGCTGGACAGTCAGGATCCCTTTTCTTCCGCTAAGGGAACCATGTTATTGGTGGGGGAGCTGTGAGAAACTCTGCGGAATAATGCTTTAGTTCAACTTCAGTTGTTAGGTATTTCCATGCACACGAGGGGAAGAGAAAAGGCAACACGAACTGATCCAGAGCTGCGTTGGTACTCTCTCCTGCTTACGGACTGCTCACAGTCAGGCAGAGTGGCATGAGTGTGGGCAAGCCCCACCGCTATAACATCGTGTCATCGTCGGAGGAGGACGTGGGCCGTCACGGCACCATGCCCGCCCTCGGCAATGGCTTCGGAAATGGCAAGATCCAGACCCGGCGGAAGCTGCGGAGCCGCTTCGTTAACAAAACCGGCCAATGCAATGTCAGCTTCGCTCACATGGACGAGCAATCCCAGCGATACCTCGCTGACATCTTCACCACCTGCGTGGACAGTCGCTGGCGCTGGATGTTTCTACTTTTCTCCCTCGCATTTGTCATCTCCTGGTTAGCGTTCGGATTTGCGTTCTGGCTTATCGCTCTTGTCCATGGTGATCTAGAGAAACCTCAAGAAAACTTCACGCCATGCGTCATGCAGGTCAACAGCTTCGTCGCAGCGTTTTTGTTCTCAGTTGAGACGCAAACAACAATTGGCTACGGATTTCGCTGCGTGACTGAGGAGTGTCCTTTAGCTGTGTTTATGGTCGTCTTCCAGTCCATTGTGGGCTGCATTATTGACTCGTTCATGATTGGTGCAATCATGGCAAAAATGGCGCGACCTAAAAAACGTGCAGAAACGATACTGTTCTCGCATAACGCCGTCATCTCAATGCGCGATGGGAAGCTCTGCCTCATGTGGCGGGTTGGGAACTTGAGGAAGAGTCACATTGTTGAGGCTCATGTGCGGGCGCAACTTATTAAACCCCGAATTACAGAAGAGGGCGAGTACATACCTTTGGATCAAATTGACATCAATGTTGGGTACGACCAAGGTCTGGACCGCATCTTCTTGGTCGCTCCCCTCACCATCCTCCATGAGATAAATGAGGAGAGTCCGCTGTTTGGAATCAACCAGCAGGATCTGGAAACATCTGATTTTGAGATTGTGGTCATACTGGAAGGAATGGTGGAGGCGACTGCCATGACGGCTCAGGTGCGCAGCTCCTACCTGTCCAGTGAGATCTTATGGGGCCATCGCTTTGAGCCTGTGGTATTCGAGGAGCGCAACCAGTATAAGGTGGACTATTCGCACTTTCATAAAACCTACGAGGTGCCCTCGACGCCACGCTGCAGCGCCAAAGACCTGGAAGACAACAAATCCTTGGAGTCCGGTGCCAACTTCTGCTATGAGAATGAGTTAGCTTTTATTAGCAGGGATGAGGAGGAGCAAGAGGAGGACAGGGGTGAGAGGGGGACTGAGCTAGAGACACTTTCAGCCAATCTGAACTTTGATCAGAGGTCGTATCACAAAGAGTCTGAAATTTGACCCCAGATCAAAGTCTTTGCTTTATTGTAGACTCGATAGCCTATTCTTTTAAGGGCTTTTCACACTGCGCTTAACCCCGGTTCATCGTCATTCTAAAAACCACTTTAATCCATGGGTAACAACATGTTTCACACCTGTAATTTGAAAGCAGTTTTAGCCCCAGGGTTTTAAAACCCTGCTCCGGAGCTGGGTTTAGCACAGCATTTGAGGTGTTAATCCTGGATTGTGGTGCTAAATTTGTTCAGTGTGTAATGGAGTGGTTTTTGTTTGCTGCTGCTGGATTCTTGGCAACAGACGGCCAATCAGAAACTGATCAGCGAGGTTCAAGTCATgctatttataaatgcagcagaAACAGTAGTAAGTGAGAGAAAAGTCAGAAAAATTGTAATCAGAACATTGTAAGCTGGCATACTTTGCTCCTTGctttcattcatttgtacttttgCCTTTGTTTTCTTGCCTTTGCGTATCTCACGAgacttaaaataactaaaaacctACCCGGTGACATAAAGCTGCCAAGATGTGGAAATGCAGTGTAAAAGTTACCTGCTGGTCAGCCAATTAGCGACAGTGACAGCGACAAATATCCAAATAAGAACCGTTAATCTGGGGTTTAGGAATGTACAGCATGAAACGTCTGTTTGTGAATACCCAGGATTATTCGTTTTACCACTAGTAtggtatgagcagtgtgaaacatgATTACAAATAACCCAAGACTCAGGCTCCGTTCAccctaatatgttttagttttaaaacgcataagttttgcttcGGTTACGCCTTTAGTCCACATTACCCCAGAGATTTTAAGCGCCAAAACCTGAGCTTTTTGAaaaaacgctgaagaggctgtttccattttaaattgctgctgctccgtgtcagtgtggatgtggaaaaaacggagacatctgaaaatggaggcatgGCTGCAGACATGCACTTATCTGactggggctttttcctcaatattaactCAAAAGTTACTCAAAGTA
>TCONS_00049738
ATGAGTGTGGGCAAGCCCCACCGCTATAACATCGTGTCATCGTCGGAGGAGGACGTGGGCCGTCACGGCACCATGCCCGCCCTCGGCAATGGCTTCGGAAATGGCAAGATCCAGACCCGGCGGAAGCTGCGGAGCCGCTTCGTTAACAAAACCGGCCAATGCAATGTCAGCTTCGCTCACATGGACGAGCAATCCCAGCGATACCTCGCTGACATCTTCACCACCTGCGTGGACAGTCGCTGGCGCTGGATGTTTCTACTTTTCTCCCTCGCATTTGTCATCTCCTGGTTAGCGTTCGGATTTGCGTTCTGGCTTATCGCTCTTGTCCATGGTGATCTAGAGAAACCTCAAGAAAACTTCACGCCATGCGTCATGCAGGTCAACAGCTTCGTCGCAGCGTTTTTGTTCTCAGTTGAGACGCAAACAACAATTGGCTACGGATTTCGCTGCGTGACTGAGGAGTGTCCTTTAGCTGTGTTTATGGTCGTCTTCCAGTCCATTGTGGGCTGCATTATTGACTCGTTCATGATTGGTGCAATCATGGCAAAAATGGCGCGACCTAAAAAACGTGCAGAAACGATACTGTTCTCGCATAACGCCGTCATCTCAATGCGCGATGGGAAGCTCTGCCTCATGTGGCGGGTTGGGAACTTGAGGAAGAGTCACATTGTTGAGGCTCATGTGCGGGCGCAACTTATTAAACCCCGAATTACAGAAGAGGGCGAGTACATACCTTTGGATCAAATTGACATCAATGTTGGGTACGACCAAGGTCTGGACCGCATCTTCTTGGTCGCTCCCCTCACCATCCTCCATGAGATAAATGAGGAGAGTCCGCTGTTTGGAATCAACCAGCAGGATCTGGAAACATCTGATTTTGAGATTGTGGTCATACTGGAAGGAATGGTGGAGGCGACTGCCATGACGGCTCAGGTGCGCAGCTCCTACCTGTCCAGTGAGATCTTATGGGGCCATCGCTTTGAGCCTGTGGTATTCGAGGAGCGCAACCAGTATAAGGTGGACTATTCGCACTTTCATAAAACCTACGAGGTGCCCTCGACGCCACGCTGCAGCGCCAAAGACCTGGAAGACAACAAATCCTTGGAGTCCGGTGCCAACTTCTGCTATGAGAATGAGTTAGCTTTTATTAGCAGGGATGAGGAGGAGCAAGAGGAGGACAGGGGTGAGAGGGGGACTGAGCTAGAGACACTTTCAGCCAATCTGAACTTTGATCAGAGGTCGTATCACAAAGAGTCTGAAATTTGA

Function

symbol description
kcnj12b Enables inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in atrium and cardiac ventricle. Orthologous to human KCNJ12 (potassium inwardly rectifying channel subfamily J member 12).

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-79 Enables inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in atrium and cardiac ventricle. Orthologous to human KCNJ12 (potassium inwardly rectifying channel subfamily J member 12).

Ensembl:

ensembl_id ENSDARG00000062618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049737 False 2743 mRNA 0.47 2 16449490 16458018
TCONS_00049738 True 1266 mRNA 0.52 1 16455749 16457014

Neighbor

gene id symbol gene type direction distance location
XLOC_025188 CR388224.1 coding upstream 76363 16373012 ~ 16373127 (+)
XLOC_025187 st8sia6 coding upstream 164231 16265924 ~ 16285259 (+)
XLOC_025185 NA coding upstream 208150 16186593 ~ 16241340 (+)
XLOC_025186 rpl19 coding upstream 217048 16229911 ~ 16232442 (+)
XLOC_025184 NA coding upstream 288031 16153224 ~ 16161459 (+)
XLOC_025190 slc6a16a coding downstream 108343 16566361 ~ 16591648 (+)
XLOC_025191 slc17a7a coding downstream 154556 16612574 ~ 16654088 (+)
XLOC_025192 zgc:55558 coding downstream 204191 16662209 ~ 16683623 (+)
XLOC_025193 gys1 coding downstream 263996 16722014 ~ 16750036 (+)
XLOC_025194 tmem86b coding downstream 304465 16762483 ~ 16770318 (+)
XLOC_025429 BX649540.1 misc downstream 13790721 30248739 ~ 30249036 (+)
XLOC_025183 CR387933.1 non-coding upstream 393758 16055009 ~ 16055732 (+)
XLOC_025180 NA non-coding upstream 583088 15865921 ~ 15866402 (+)
XLOC_025197 BX470185.1 non-coding downstream 416383 16874401 ~ 16883304 (+)
XLOC_025203 CU207238.1 non-coding downstream 937221 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1582595 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1731591 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 2212806 18670824 ~ 18672291 (+)

Expression


Co-expression Network