G579326


Basic Information

Item Value
gene id G579326
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16559463 ~ 16561262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU660997
tacctttaactaggcaagtccattaagaacaaattcttatttacaatgactgcctaggaacagtgggttaactgccttgttcaaggggcagaacgacagatttgtaccttgtcagctcagggattcaatcttgcaaccttttggttactagtccaatgctctaatcactaggctacgctgccaccccatctgtcctctcattggctagaatggtcccccacctgatcttgcctcctcccgaagacatttattttcattgttagagcGGCCACTTGAGTATCTTGACAATATAACTGATAATCTGTGGTTTAATTAAACAAACAGTACTGTAATGAATGGCTGAAGAACGGTGTGTACAGTTTGGGGAAAACGTGTCATTCAGTACAAACCGTCACACAACGTAGCAACCTTTGAAATAACTGAATGCACCCCAGAATTGGGCAGCCTGTGTAAACACATCCAAAGAGTCTCCCCTACTTATCTTTTATTCAAAATTCTAGTTTGCAATGCAGATTGTATTACATAGTGGGAATAACAATATACAAATAAGAACATGATTAAAAGCAGAAACCTCTTAAATGTGAACCTCTTCCCCATCGAGTGACATTTAAAAGCCTAACTAATGAAGGTATTGGGTTGCCTGACGACACCCTGAACCTAATCCTGCTGCTCTATTCATCACTACATACAttggcttcagaaagtattgatacCACTTGACCACGTtgcattacagcctgaattcaacaatttaaaaaaaaaatcacacccATCTACCCAAAATGTCAAAAGTGATAACatggttttaaaaatgtattgaaaattaaatctCTAATTTACATAATTCACACCCCTGAGGCAATGCTTTGtagaagcagctttggcagcgattccATCTTTTAGTCGTGTATGTCTGTATCAGCGTGGCACATCTGggttttctcccattcttccttgcagattttctcaaccTCTTAAATTAGATGGGGAGCGGTAGTGAACAGCAATCttagtctttccacagattttgggattcaagtctgggccactcaaggactttcacagtcttgttctgaagccattccagcgttgctttggctgtttgcttggggtcattgtcctgttggaatggaaatcttcgccccagtctaaggtcgtttacactctgaagcaggttctcatcaaggatctgcCTGTGtctggctccattcattgttcccgccatccttaccagtctcccagtccatgccactGAAAAGACGGGTGATGAattgtgcctggttttctccagacatagcgctttgcattcaggccaaagagtaagTGATCTTATCATACCACAGAATCATTTGCCTTATTCTTTCAGTCCTTCATACTTTTCTGCAACTCCATgggtgctgtcatgtgcctttttcacaagaagtggcttctgtctggtcactctcCCGTAAatcccagattggtgaagtgctgtagagactgtcgTCCTTCTGACAGGTTTTTCATCTCAGTCAAGGAACTCTAGTTCTTTCAGAATGGTcattggattcttggtcacctccctgaccaaggtcctttttacccggttgctcagtttagtcggacggccagctctaggcagtcTGGGTAGTTCCGCATTTTTTCACTTTTccaatggagaccactgtgctcttggaaactttcaacactctagaaattgttttatacgATATCCTTTCCTGGATATATGCATCATCACAATTCTCTCTGAGATCTatggacagttccttggacttcagggtatagtttctgctctgacat

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU660997 True 1800 lncRNA 0.42 1 16559463 16561262

Neighbor

gene id symbol gene type direction distance location
LOC110528859 LOC106575376 coding upstream 169 16544860 ~ 16559294 (+)
LOC110528787 LOC106575379 coding upstream 21507 16510437 ~ 16537956 (+)
LOC110528786 omp-1 coding upstream 95764 16457220 ~ 16463699 (+)
LOC110528885 c1ql2 coding upstream 107413 16446388 ~ 16452050 (+)
d2hgdh LOC106575380 coding upstream 123749 16431284 ~ 16435714 (+)
LOC110528883 ola1 coding downstream 93824 16655086 ~ 16663049 (+)
LOC110528869 LOC106574522 coding downstream 102412 16663674 ~ 16671573 (+)
LOC110528893 LOC105019901 coding downstream 121820 16683082 ~ 16691072 (+)
LOC118965266 NA coding downstream 122079 16683341 ~ 16688245 (+)
LOC110528788 NA coding downstream 186153 16747415 ~ 16763145 (+)
G579323 NA non-coding upstream 14676 16544545 ~ 16544787 (+)
G579320 NA non-coding upstream 16030 16543003 ~ 16543433 (+)
G579319 NA non-coding upstream 17401 16541841 ~ 16542062 (+)
G579020 NA non-coding upstream 49639 16509593 ~ 16509824 (+)
G579346 NA non-coding downstream 30500 16591762 ~ 16591984 (+)
G579348 NA non-coding downstream 32152 16593414 ~ 16593919 (+)
G579349 NA non-coding downstream 35540 16596802 ~ 16597223 (+)
G579350 NA non-coding downstream 36730 16597992 ~ 16598298 (+)
G579329 LOC106575375 non-coding downstream 37280 16598542 ~ 16600963 (+)
LOC110528915 LOC106574584 other upstream 511456 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 554470 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1060877 15492870 ~ 15498827 (+)
G578389 NA other upstream 1095098 15462245 ~ 15464365 (+)
G579566 NA other downstream 257280 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 481147 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 772462 17333699 ~ 17336419 (+)
G580179 NA other downstream 837531 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 1109013 17670275 ~ 17680668 (+)

Expression


Co-expression Network