G579350


Basic Information

Item Value
gene id G579350
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16597992 ~ 16598298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU661025
tatCGGCGGCTGGCATCCAACACTTTTGTGCATTAATGCCATCTAATGTACTGGAGCGCCCCTGCCTCCCGTAACTTAAAAATGTACAAATAGAAGTATAAAGAGGGGTTCGAACGCCCCGAATTGCAGGCCGCAATTGCACCCTGCTCACGAAGTTCAAGGCCGACGGCATTACTGCAGGCTGTTTCCAGAAAACAGGATCAGTCATTatagtgaatgggaaaatggtAATCGTGGCACCAAAATTGCTTATATTATATCAGACTTAACATTATGTCCTTGAACAGATTGTTTTAATTGgtattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU661025 True 307 lncRNA 0.43 1 16597992 16598298

Neighbor

gene id symbol gene type direction distance location
LOC110528859 LOC106575376 coding upstream 38698 16544860 ~ 16559294 (+)
LOC110528787 LOC106575379 coding upstream 60036 16510437 ~ 16537956 (+)
LOC110528786 omp-1 coding upstream 134293 16457220 ~ 16463699 (+)
LOC110528885 c1ql2 coding upstream 145942 16446388 ~ 16452050 (+)
d2hgdh LOC106575380 coding upstream 162278 16431284 ~ 16435714 (+)
LOC110528883 ola1 coding downstream 56788 16655086 ~ 16663049 (+)
LOC110528869 LOC106574522 coding downstream 65376 16663674 ~ 16671573 (+)
LOC110528893 LOC105019901 coding downstream 84784 16683082 ~ 16691072 (+)
LOC118965266 NA coding downstream 85043 16683341 ~ 16688245 (+)
LOC110528788 NA coding downstream 149117 16747415 ~ 16763145 (+)
G579349 NA non-coding upstream 769 16596802 ~ 16597223 (+)
G579348 NA non-coding upstream 4073 16593414 ~ 16593919 (+)
G579346 NA non-coding upstream 6008 16591762 ~ 16591984 (+)
G579326 NA non-coding upstream 36730 16559463 ~ 16561262 (+)
G579329 LOC106575375 non-coding downstream 244 16598542 ~ 16600963 (+)
G579354 NA non-coding downstream 8711 16607009 ~ 16607296 (+)
G579357 NA non-coding downstream 11214 16609512 ~ 16609872 (+)
G579360 NA non-coding downstream 13037 16611335 ~ 16611546 (+)
G579325 LOC106574519 non-coding downstream 40770 16639068 ~ 16639297 (+)
LOC110528915 LOC106574584 other upstream 549985 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 592999 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1099406 15492870 ~ 15498827 (+)
G578389 NA other upstream 1133627 15462245 ~ 15464365 (+)
G579566 NA other downstream 220244 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 444111 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 735426 17333699 ~ 17336419 (+)
G580179 NA other downstream 800495 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 1071977 17670275 ~ 17680668 (+)

Expression


Co-expression Network