Gene
RNA
| Item | Value |
|---|---|
| gene id | G579335 |
| gene name | LOC106574517 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 16640039 ~ 16640494 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| oocyte zinc finger protein XlCOF6-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU661006 | True | 456 | lncRNA | 0.44 | 1 | 16640039 | 16640494 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528859 | LOC106575376 | coding | upstream | 80745 | 16544860 ~ 16559294 (+) |
| LOC110528787 | LOC106575379 | coding | upstream | 102083 | 16510437 ~ 16537956 (+) |
| LOC110528786 | omp-1 | coding | upstream | 176340 | 16457220 ~ 16463699 (+) |
| LOC110528885 | c1ql2 | coding | upstream | 187989 | 16446388 ~ 16452050 (+) |
| d2hgdh | LOC106575380 | coding | upstream | 204325 | 16431284 ~ 16435714 (+) |
| LOC110528883 | ola1 | coding | downstream | 14592 | 16655086 ~ 16663049 (+) |
| LOC110528869 | LOC106574522 | coding | downstream | 23180 | 16663674 ~ 16671573 (+) |
| LOC110528893 | LOC105019901 | coding | downstream | 42588 | 16683082 ~ 16691072 (+) |
| LOC118965266 | NA | coding | downstream | 42847 | 16683341 ~ 16688245 (+) |
| LOC110528788 | NA | coding | downstream | 106921 | 16747415 ~ 16763145 (+) |
| G579325 | LOC106574519 | non-coding | upstream | 742 | 16639068 ~ 16639297 (+) |
| G579360 | NA | non-coding | upstream | 28493 | 16611335 ~ 16611546 (+) |
| G579357 | NA | non-coding | upstream | 30167 | 16609512 ~ 16609872 (+) |
| G579354 | NA | non-coding | upstream | 32743 | 16607009 ~ 16607296 (+) |
| G579329 | LOC106575375 | non-coding | upstream | 39076 | 16598542 ~ 16600963 (+) |
| G579383 | NA | non-coding | downstream | 7504 | 16647998 ~ 16648233 (+) |
| G579385 | NA | non-coding | downstream | 11811 | 16652305 ~ 16652529 (+) |
| G579389 | NA | non-coding | downstream | 50794 | 16691288 ~ 16692003 (+) |
| G579400 | LOC106574524 | non-coding | downstream | 59095 | 16699589 ~ 16699831 (+) |
| LOC110528915 | LOC106574584 | other | upstream | 592032 | 16046065 ~ 16048048 (+) |
| LOC110528906 | LOC106574480 | other | upstream | 635046 | 15993464 ~ 16004993 (+) |
| LOC110528902 | atr | other | upstream | 1141453 | 15492870 ~ 15498827 (+) |
| G578389 | NA | other | upstream | 1175674 | 15462245 ~ 15464365 (+) |
| G579566 | NA | other | downstream | 178048 | 16818542 ~ 16819890 (+) |
| LOC110527403 | LOC106574539 | other | downstream | 401915 | 17042409 ~ 17097924 (+) |
| si:ch211-181l5.2 | cl10a | other | downstream | 693230 | 17333699 ~ 17336419 (+) |
| G580179 | NA | other | downstream | 758299 | 17398793 ~ 17400533 (+) |
| G580315 | LOC106575303 | other | downstream | 1029781 | 17670275 ~ 17680668 (+) |
