Gene
RNA
| Item | Value |
|---|---|
| gene id | G579404 |
| gene name | LOC106574525 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 16707276 ~ 16708204 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| sentrin-specific protease 2-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU661109 | True | 486 | lncRNA | 0.50 | 3 | 16707276 | 16708204 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528893 | LOC105019901 | coding | upstream | 16204 | 16683082 ~ 16691072 (+) |
| LOC118965266 | NA | coding | upstream | 19031 | 16683341 ~ 16688245 (+) |
| LOC110528869 | LOC106574522 | coding | upstream | 35703 | 16663674 ~ 16671573 (+) |
| LOC110528883 | ola1 | coding | upstream | 44227 | 16655086 ~ 16663049 (+) |
| LOC110528859 | LOC106575376 | coding | upstream | 147982 | 16544860 ~ 16559294 (+) |
| LOC110528788 | NA | coding | downstream | 39211 | 16747415 ~ 16763145 (+) |
| LOC110528796 | LOC106574532 | coding | downstream | 198495 | 16906699 ~ 16920069 (+) |
| trnak-uuu | NA | coding | downstream | 217466 | 16925670 ~ 16925742 (+) |
| trnak-uuu-2 | NA | coding | downstream | 219012 | 16927216 ~ 16927288 (+) |
| trnak-cuu | NA | coding | downstream | 222063 | 16930267 ~ 16930339 (+) |
| G579400 | LOC106574524 | non-coding | upstream | 7445 | 16699589 ~ 16699831 (+) |
| G579389 | NA | non-coding | upstream | 15273 | 16691288 ~ 16692003 (+) |
| G579385 | NA | non-coding | upstream | 54747 | 16652305 ~ 16652529 (+) |
| G579383 | NA | non-coding | upstream | 59043 | 16647998 ~ 16648233 (+) |
| G579509 | LOC106574571 | non-coding | downstream | 4737 | 16712941 ~ 16713968 (+) |
| G579525 | LOC106575364 | non-coding | downstream | 27470 | 16735674 ~ 16736058 (+) |
| G579526 | LOC106575364 | non-coding | downstream | 28689 | 16736893 ~ 16737230 (+) |
| G579527 | LOC106575364 | non-coding | downstream | 29166 | 16737370 ~ 16738150 (+) |
| G579530 | NA | non-coding | downstream | 33754 | 16741958 ~ 16742196 (+) |
| LOC110528786 | omp-1 | other | upstream | 243584 | 16457220 ~ 16463699 (+) |
| LOC110528915 | LOC106574584 | other | upstream | 659269 | 16046065 ~ 16048048 (+) |
| LOC110528906 | LOC106574480 | other | upstream | 702283 | 15993464 ~ 16004993 (+) |
| LOC110528902 | atr | other | upstream | 1208690 | 15492870 ~ 15498827 (+) |
| G578389 | NA | other | upstream | 1242911 | 15462245 ~ 15464365 (+) |
| G579566 | NA | other | downstream | 110338 | 16818542 ~ 16819890 (+) |
| LOC110527403 | LOC106574539 | other | downstream | 334205 | 17042409 ~ 17097924 (+) |
| si:ch211-181l5.2 | cl10a | other | downstream | 625520 | 17333699 ~ 17336419 (+) |
| G580179 | NA | other | downstream | 690589 | 17398793 ~ 17400533 (+) |
| G580315 | LOC106575303 | other | downstream | 962071 | 17670275 ~ 17680668 (+) |
